Analysis of interatomic Contacts of Structural Units in PDB entry:
9MB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MB8 entry

There are 4 chains in PDB entry 9MB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 49TYR 318
C
 TRP 20HIS 197
A
 GLY 49TYR 318
D
 TRP 20ASP 195
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 9MB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
55 61Right-handed alpha
Helix 2
AA2
B
81 86Right-handed alpha
Helix 3
AA3
B
87 92Right-handed alpha
Helix 4
AA4
B
110 114Right-handed 310
Helix 5
AA5
B
121 136Right-handed alpha
Helix 6
AA6
B
147 159Right-handed alpha
Helix 7
AA7
B
160 162Right-handed 310
Helix 8
AA8
B
187 201Right-handed alpha
Helix 9
AA9
B
201 215Right-handed alpha
Helix 10
AB1
B
218 231Right-handed alpha
Helix 11
AB2
B
233 245Right-handed alpha
Helix 12
AB3
B
246 248Right-handed 310
Helix 13
AB4
B
249 254Right-handed alpha
Helix 14
AB5
B
273 282Right-handed alpha
Helix 15
AB6
B
298 303Right-handed alpha
Helix 16
AB7
B
303 315Right-handed alpha
Helix 17
AB8
C
35 39Right-handed 310
Helix 18
AB9
C
46 58Right-handed alpha
Helix 19
AC1
C
62 81Right-handed alpha
Helix 20
AC2
C
83 103Right-handed alpha
Helix 21
AC3
C
109 115Right-handed alpha
Helix 22
AC4
C
115 120Right-handed alpha
Helix 23
AC5
A
54 61Right-handed alpha
Helix 24
AC6
A
81 86Right-handed alpha
Helix 25
AC7
A
87 92Right-handed alpha
Helix 26
AC8
A
110 114Right-handed 310
Helix 27
AC9
A
121 136Right-handed alpha
Helix 28
AD1
A
147 159Right-handed alpha
Helix 29
AD2
A
187 201Right-handed alpha
Helix 30
AD3
A
202 215Right-handed alpha
Helix 31
AD4
A
218 231Right-handed alpha
Helix 32
AD5
A
233 246Right-handed alpha
Helix 33
AD6
A
249 256Right-handed 310
Helix 34
AD7
A
273 282Right-handed alpha
Helix 35
AD8
A
298 303Right-handed alpha
Helix 36
AD9
A
303 315Right-handed alpha
Helix 37
AE1
D
33 38Right-handed alpha
Helix 38
AE2
D
43 45Right-handed 310
Helix 39
AE3
D
46 58Right-handed alpha
Helix 40
AE4
D
62 81Right-handed alpha
Helix 41
AE5
D
83 103Right-handed alpha
Helix 42
AE6
D
109 115Right-handed alpha
Helix 43
AE7
D
115 121Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 9MB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 167first strand
Strand 2
B
141 144parallel
Strand 3
B
71 74parallel
Strand 4
B
97 99parallel
Strand 5
B
64 66anti-parallel
Strand 6
C
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
260 265first strand
Strand 2
B
287 292parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
135 136first strand
Strand 2
C
151 152anti-parallel
Strand 3
C
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 171first strand
Strand 2
C
192 194anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 167first strand
Strand 2
A
141 144parallel
Strand 3
A
71 74parallel
Strand 4
A
97 99parallel
Strand 5
A
64 66anti-parallel
Strand 6
D
130 132anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 265first strand
Strand 2
A
287 292parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
135 136first strand
Strand 2
D
151 152anti-parallel
Strand 3
D
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
169 171first strand
Strand 2
D
192 194anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il