Analysis of interatomic Contacts of Structural Units in PDB entry:
9MBA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MBA entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 10 chains in PDB entry 9MBA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 6	PRO 366
C	THR 6	PRO 366
D	ALA 37	ASN 892
D	SER 894	SER 894
D	LYS 897	THR 899
R	HIS 38	ASN 892
R	SER 894	SER 894
R	LYS 897	THR 899
S	GLY 4	SER 246
T	GLY 3	SER 246

There are 55 helices in PDB entry 9MBA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	65	72	Right-handed alpha
Helix 2	AA2	B	98	108	Right-handed alpha
Helix 3	AA3	C	65	72	Right-handed alpha
Helix 4	AA4	C	98	109	Right-handed alpha
Helix 5	AA5	D	72	87	Right-handed alpha
Helix 6	AA6	D	108	116	Right-handed alpha
Helix 7	AA7	D	116	122	Right-handed alpha
Helix 8	AA8	D	155	169	Right-handed alpha
Helix 9	AA9	D	181	185	Right-handed 310
Helix 10	AB1	D	198	213	Right-handed alpha
Helix 11	AB2	D	225	244	Right-handed alpha
Helix 12	AB3	D	261	271	Right-handed alpha
Helix 13	AB4	D	285	298	Right-handed alpha
Helix 14	AB5	D	315	319	Right-handed 310
Helix 15	AB6	D	321	325	Right-handed 310
Helix 16	AB7	D	338	348	Right-handed alpha
Helix 17	AB8	D	358	368	Right-handed alpha
Helix 18	AB9	D	401	424	Right-handed alpha
Helix 19	AC1	D	431	435	Right-handed 310
Helix 20	AC2	D	438	447	Right-handed alpha
Helix 21	AC3	D	581	608	Right-handed alpha
Helix 22	AC4	D	611	618	Right-handed alpha
Helix 23	AC5	D	618	642	Right-handed alpha
Helix 24	AC6	D	646	678	Right-handed alpha
Helix 25	AC7	D	691	715	Right-handed alpha
Helix 26	AC8	D	745	752	Right-handed alpha
Helix 27	AC9	D	753	770	Right-handed alpha
Helix 28	AD1	D	779	804	Right-handed alpha
Helix 29	AD2	D	811	834	Right-handed alpha
Helix 30	AD3	D	834	842	Right-handed alpha
Helix 31	AD4	R	72	89	Right-handed alpha
Helix 32	AD5	R	108	116	Right-handed alpha
Helix 33	AD6	R	116	121	Right-handed alpha
Helix 34	AD7	R	155	169	Right-handed alpha
Helix 35	AD8	R	180	185	Right-handed 310
Helix 36	AD9	R	200	213	Right-handed alpha
Helix 37	AE1	R	225	243	Right-handed alpha
Helix 38	AE2	R	261	270	Right-handed alpha
Helix 39	AE3	R	285	297	Right-handed alpha
Helix 40	AE4	R	321	326	Right-handed 310
Helix 41	AE5	R	338	347	Right-handed alpha
Helix 42	AE6	R	358	368	Right-handed alpha
Helix 43	AE7	R	399	401	Right-handed 310
Helix 44	AE8	R	402	424	Right-handed alpha
Helix 45	AE9	R	438	448	Right-handed alpha
Helix 46	AF1	R	581	609	Right-handed alpha
Helix 47	AF2	R	611	617	Right-handed alpha
Helix 48	AF3	R	618	641	Right-handed alpha
Helix 49	AF4	R	644	678	Right-handed alpha
Helix 50	AF5	R	691	717	Right-handed alpha
Helix 51	AF6	R	745	771	Right-handed alpha
Helix 52	AF7	R	779	804	Right-handed alpha
Helix 53	AF8	R	808	842	Right-handed alpha
Helix 54	AF9	S	213	217	Right-handed 310
Helix 55	AG1	T	82	86	Right-handed 310

There are 33 sheets in PDB entry 9MBA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	117	first strand
Strand 2	B	37	42	anti-parallel
Strand 3	B	19	22	anti-parallel
Strand 4	B	8	12	anti-parallel
Strand 5	R	894	896	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	163	171	parallel
Strand 3	B	141	151	anti-parallel
Strand 4	B	52	63	anti-parallel
Strand 5	B	75	85	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	28	first strand
Strand 2	B	163	171	parallel
Strand 3	B	141	151	anti-parallel
Strand 4	B	127	129	anti-parallel
Strand 5	B	288	290	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	189	first strand
Strand 2	B	196	203	anti-parallel
Strand 3	B	214	222	anti-parallel
Strand 4	B	266	274	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	207	209	first strand
Strand 2	B	341	352	parallel
Strand 3	B	317	329	anti-parallel
Strand 4	B	228	241	anti-parallel
Strand 5	B	249	258	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	18	22	anti-parallel
Strand 3	C	37	43	anti-parallel
Strand 4	C	113	117	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	26	28	first strand
Strand 2	C	169	171	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	85	first strand
Strand 2	C	53	63	anti-parallel
Strand 3	C	140	150	anti-parallel
Strand 4	C	164	166	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	85	first strand
Strand 2	C	53	63	anti-parallel
Strand 3	C	140	150	anti-parallel
Strand 4	C	127	129	anti-parallel
Strand 5	C	288	290	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	188	first strand
Strand 2	C	197	203	anti-parallel
Strand 3	C	214	222	anti-parallel
Strand 4	C	266	274	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	208	first strand
Strand 2	C	341	351	parallel
Strand 3	C	317	329	anti-parallel
Strand 4	C	228	241	anti-parallel
Strand 5	C	249	258	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	40	41	first strand
Strand 2	D	98	104	anti-parallel
Strand 3	D	46	52	parallel
Strand 4	D	149	151	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	66	67	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	175	first strand
Strand 2	D	192	194	parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	246	253	first strand
Strand 2	D	217	223	parallel
Strand 3	D	278	281	parallel
Strand 4	D	305	307	parallel
Strand 5	D	329	333	parallel
Strand 6	D	471	476	anti-parallel
Strand 7	D	485	491	anti-parallel
Strand 8	D	495	497	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	450	452	first strand
Strand 2	D	458	460	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	527	528	first strand
Strand 2	D	536	537	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	730	731	first strand
Strand 2	D	739	740	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	40	41	first strand
Strand 2	R	98	104	anti-parallel
Strand 3	R	46	52	parallel
Strand 4	R	147	150	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	55	56	first strand
Strand 2	R	66	67	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	173	175	first strand
Strand 2	R	192	194	parallel

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There are 8 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	246	253	first strand
Strand 2	R	217	223	parallel
Strand 3	R	277	281	parallel
Strand 4	R	304	307	parallel
Strand 5	R	329	333	parallel
Strand 6	R	471	478	anti-parallel
Strand 7	R	483	491	anti-parallel
Strand 8	R	495	497	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	730	731	first strand
Strand 2	R	739	740	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	8	10	first strand
Strand 2	S	23	29	anti-parallel
Strand 3	S	74	79	anti-parallel
Strand 4	S	66	70	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	14	15	first strand
Strand 2	S	106	108	parallel
Strand 3	S	89	94	anti-parallel
Strand 4	S	37	42	anti-parallel
Strand 5	S	49	53	anti-parallel
Strand 6	S	57	58	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	147	149	first strand
Strand 2	S	204	206	anti-parallel
Strand 3	S	197	199	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	183	186	first strand
Strand 2	S	171	178	anti-parallel
Strand 3	S	158	165	anti-parallel
Strand 4	S	218	226	anti-parallel
Strand 5	S	235	236	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	183	186	first strand
Strand 2	S	171	178	anti-parallel
Strand 3	S	158	165	anti-parallel
Strand 4	S	218	226	anti-parallel
Strand 5	S	240	242	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	7	9	first strand
Strand 2	T	23	28	anti-parallel
Strand 3	T	73	77	anti-parallel
Strand 4	T	66	69	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	13	14	first strand
Strand 2	T	105	107	parallel
Strand 3	T	88	93	anti-parallel
Strand 4	T	36	41	anti-parallel
Strand 5	T	48	52	anti-parallel
Strand 6	T	56	57	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	147	149	first strand
Strand 2	T	204	206	anti-parallel
Strand 3	T	197	199	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	183	186	first strand
Strand 2	T	172	178	anti-parallel
Strand 3	T	158	165	anti-parallel
Strand 4	T	218	226	anti-parallel
Strand 5	T	233	236	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	183	186	first strand
Strand 2	T	172	178	anti-parallel
Strand 3	T	158	165	anti-parallel
Strand 4	T	218	226	anti-parallel
Strand 5	T	240	242	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MBA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MBA