Analysis of interatomic Contacts of Structural Units in PDB entry:
9MBB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MBB entry

There are 2 chains in PDB entry 9MBB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39ILE 841
B
 SER 39ILE 841
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 9MBB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
72 87Right-handed alpha
Helix 2
AA2
A
108 120Right-handed alpha
Helix 3
AA3
A
158 168Right-handed alpha
Helix 4
AA4
A
180 184Right-handed 310
Helix 5
AA5
A
198 201Right-handed 310
Helix 6
AA6
A
202 213Right-handed alpha
Helix 7
AA7
A
225 240Right-handed alpha
Helix 8
AA8
A
260 270Right-handed alpha
Helix 9
AA9
A
283 294Right-handed alpha
Helix 10
AB1
A
338 348Right-handed alpha
Helix 11
AB2
A
359 368Right-handed alpha
Helix 12
AB3
A
401 424Right-handed alpha
Helix 13
AB4
A
431 436Right-handed alpha
Helix 14
AB5
A
438 447Right-handed alpha
Helix 15
AB6
A
499 502Right-handed 310
Helix 16
AB7
A
584 608Right-handed alpha
Helix 17
AB8
A
614 619Right-handed alpha
Helix 18
AB9
A
619 639Right-handed alpha
Helix 19
AC1
A
646 675Right-handed alpha
Helix 20
AC2
A
676 678Right-handed 310
Helix 21
AC3
A
690 712Right-handed alpha
Helix 22
AC4
A
745 753Right-handed alpha
Helix 23
AC5
A
753 772Right-handed alpha
Helix 24
AC6
A
779 796Right-handed alpha
Helix 25
AC7
A
796 803Right-handed alpha
Helix 26
AC8
A
804 806Right-handed 310
Helix 27
AC9
A
809 830Right-handed alpha
Helix 28
AD1
A
835 839Right-handed 310
Helix 29
AD2
B
72 87Right-handed alpha
Helix 30
AD3
B
108 120Right-handed alpha
Helix 31
AD4
B
158 168Right-handed alpha
Helix 32
AD5
B
180 184Right-handed 310
Helix 33
AD6
B
198 201Right-handed 310
Helix 34
AD7
B
202 213Right-handed alpha
Helix 35
AD8
B
225 240Right-handed alpha
Helix 36
AD9
B
260 270Right-handed alpha
Helix 37
AE1
B
283 294Right-handed alpha
Helix 38
AE2
B
338 348Right-handed alpha
Helix 39
AE3
B
359 368Right-handed alpha
Helix 40
AE4
B
401 424Right-handed alpha
Helix 41
AE5
B
431 436Right-handed alpha
Helix 42
AE6
B
438 447Right-handed alpha
Helix 43
AE7
B
499 502Right-handed 310
Helix 44
AE8
B
584 608Right-handed alpha
Helix 45
AE9
B
614 619Right-handed alpha
Helix 46
AF1
B
619 639Right-handed alpha
Helix 47
AF2
B
646 675Right-handed alpha
Helix 48
AF3
B
676 678Right-handed 310
Helix 49
AF4
B
690 712Right-handed alpha
Helix 50
AF5
B
745 753Right-handed alpha
Helix 51
AF6
B
753 772Right-handed alpha
Helix 52
AF7
B
779 796Right-handed alpha
Helix 53
AF8
B
796 803Right-handed alpha
Helix 54
AF9
B
804 806Right-handed 310
Helix 55
AG1
B
809 830Right-handed alpha
Helix 56
AG2
B
835 839Right-handed 310
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There are 12 sheets in PDB entry 9MBB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 42first strand
Strand 2
A
98 104anti-parallel
Strand 3
A
46 52parallel
Strand 4
A
147 151parallel
Strand 5
A
173 175parallel
Strand 6
A
192 194parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
246 252first strand
Strand 2
A
217 222parallel
Strand 3
A
277 281parallel
Strand 4
A
304 307parallel
Strand 5
A
328 333parallel
Strand 6
A
470 479anti-parallel
Strand 7
A
482 492anti-parallel
Strand 8
A
495 497anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
458 459anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
524 528first strand
Strand 2
A
536 540anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
561 562first strand
Strand 2
A
569 570anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
722 723first strand
Strand 2
A
740 741anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
98 104anti-parallel
Strand 3
B
46 52parallel
Strand 4
B
147 151parallel
Strand 5
B
173 175parallel
Strand 6
B
192 194parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
246 252first strand
Strand 2
B
217 222parallel
Strand 3
B
277 281parallel
Strand 4
B
304 307parallel
Strand 5
B
328 333parallel
Strand 6
B
470 479anti-parallel
Strand 7
B
482 492anti-parallel
Strand 8
B
495 497anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
451 452first strand
Strand 2
B
458 459anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
524 528first strand
Strand 2
B
536 540anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
561 562first strand
Strand 2
B
569 570anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
722 723first strand
Strand 2
B
740 741anti-parallel
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