Analysis of interatomic Contacts of Structural Units in PDB entry:
9MBD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MBD entry

There are 2 chains in PDB entry 9MBD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 39	ILE 841
B	SER 39	ILE 841

There are 54 helices in PDB entry 9MBD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	72	87	Right-handed alpha
Helix 2	AA2	A	109	120	Right-handed alpha
Helix 3	AA3	A	155	168	Right-handed alpha
Helix 4	AA4	A	180	184	Right-handed 310
Helix 5	AA5	A	198	200	Right-handed 310
Helix 6	AA6	A	201	214	Right-handed alpha
Helix 7	AA7	A	225	243	Right-handed alpha
Helix 8	AA8	A	261	270	Right-handed alpha
Helix 9	AA9	A	283	297	Right-handed alpha
Helix 10	AB1	A	322	326	Right-handed 310
Helix 11	AB2	A	338	346	Right-handed alpha
Helix 12	AB3	A	358	366	Right-handed alpha
Helix 13	AB4	A	399	403	Right-handed 310
Helix 14	AB5	A	404	421	Right-handed alpha
Helix 15	AB6	A	438	447	Right-handed alpha
Helix 16	AB7	A	454	456	Right-handed 310
Helix 17	AB8	A	499	502	Right-handed 310
Helix 18	AB9	A	581	583	Right-handed 310
Helix 19	AC1	A	584	608	Right-handed alpha
Helix 20	AC2	A	613	617	Right-handed 310
Helix 21	AC3	A	621	640	Right-handed alpha
Helix 22	AC4	A	648	678	Right-handed alpha
Helix 23	AC5	A	690	700	Right-handed alpha
Helix 24	AC6	A	702	712	Right-handed alpha
Helix 25	AC7	A	745	770	Right-handed alpha
Helix 26	AC8	A	779	802	Right-handed alpha
Helix 27	AC9	A	812	832	Right-handed alpha
Helix 28	AD1	B	72	87	Right-handed alpha
Helix 29	AD2	B	109	120	Right-handed alpha
Helix 30	AD3	B	155	168	Right-handed alpha
Helix 31	AD4	B	180	184	Right-handed 310
Helix 32	AD5	B	198	200	Right-handed 310
Helix 33	AD6	B	201	214	Right-handed alpha
Helix 34	AD7	B	225	243	Right-handed alpha
Helix 35	AD8	B	261	270	Right-handed alpha
Helix 36	AD9	B	283	297	Right-handed alpha
Helix 37	AE1	B	322	326	Right-handed 310
Helix 38	AE2	B	338	346	Right-handed alpha
Helix 39	AE3	B	358	366	Right-handed alpha
Helix 40	AE4	B	399	403	Right-handed 310
Helix 41	AE5	B	404	421	Right-handed alpha
Helix 42	AE6	B	438	447	Right-handed alpha
Helix 43	AE7	B	454	456	Right-handed 310
Helix 44	AE8	B	499	502	Right-handed 310
Helix 45	AE9	B	581	583	Right-handed 310
Helix 46	AF1	B	584	608	Right-handed alpha
Helix 47	AF2	B	613	617	Right-handed 310
Helix 48	AF3	B	621	640	Right-handed alpha
Helix 49	AF4	B	648	678	Right-handed alpha
Helix 50	AF5	B	690	700	Right-handed alpha
Helix 51	AF6	B	702	712	Right-handed alpha
Helix 52	AF7	B	745	770	Right-handed alpha
Helix 53	AF8	B	779	802	Right-handed alpha
Helix 54	AF9	B	812	832	Right-handed alpha

There are 16 sheets in PDB entry 9MBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	101	104	anti-parallel
Strand 3	A	46	52	parallel
Strand 4	A	98	99	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	101	104	anti-parallel
Strand 3	A	46	52	parallel
Strand 4	A	147	151	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	246	247	first strand
Strand 2	A	217	220	parallel
Strand 3	A	277	279	parallel
Strand 4	A	304	306	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	331	333	first strand
Strand 2	A	470	474	anti-parallel
Strand 3	A	487	492	anti-parallel
Strand 4	A	495	497	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	452	first strand
Strand 2	A	458	459	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	524	528	first strand
Strand 2	A	536	540	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	547	first strand
Strand 2	A	553	555	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	561	562	first strand
Strand 2	A	569	570	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	101	104	anti-parallel
Strand 3	B	46	52	parallel
Strand 4	B	98	99	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	40	41	first strand
Strand 2	B	101	104	anti-parallel
Strand 3	B	46	52	parallel
Strand 4	B	147	151	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	246	247	first strand
Strand 2	B	217	220	parallel
Strand 3	B	277	279	parallel
Strand 4	B	304	306	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	470	474	anti-parallel
Strand 3	B	487	492	anti-parallel
Strand 4	B	495	497	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	458	459	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	524	528	first strand
Strand 2	B	536	540	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	545	547	first strand
Strand 2	B	553	555	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	561	562	first strand
Strand 2	B	569	570	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MBD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MBD