Analysis of interatomic Contacts of Structural Units in PDB entry:
9MBZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MBZ entry

There are 6 chains in PDB entry 9MBZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
F	LYS 22	PRO 275
A	PRO 244	TYR 472
B	PRO 244	ALA 465
C	PRO 244	MET 464
D	PRO 244	TYR 472
J	GLU 3	PRO 135

There are 20 helices in PDB entry 9MBZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	F	217	221	Right-handed 310
Helix 2	AA2	A	252	258	Right-handed alpha
Helix 3	AA3	A	311	317	Right-handed alpha
Helix 4	AA4	A	355	361	Right-handed alpha
Helix 5	AA5	A	421	426	Right-handed alpha
Helix 6	AA6	A	449	454	Right-handed alpha
Helix 7	AA7	B	252	258	Right-handed alpha
Helix 8	AA8	B	311	318	Right-handed alpha
Helix 9	AA9	B	355	362	Right-handed alpha
Helix 10	AB1	B	421	426	Right-handed alpha
Helix 11	AB2	C	252	258	Right-handed alpha
Helix 12	AB3	C	355	362	Right-handed alpha
Helix 13	AB4	C	391	393	Right-handed 310
Helix 14	AB5	C	421	426	Right-handed alpha
Helix 15	AB6	D	252	258	Right-handed alpha
Helix 16	AB7	D	311	317	Right-handed alpha
Helix 17	AB8	D	355	362	Right-handed alpha
Helix 18	AB9	D	391	393	Right-handed 310
Helix 19	AC1	D	421	426	Right-handed alpha
Helix 20	AC2	J	64	68	Right-handed alpha

There are 31 sheets in PDB entry 9MBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	24	26	first strand
Strand 2	F	43	45	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	33	35	first strand
Strand 2	F	96	101	parallel
Strand 3	F	81	87	anti-parallel
Strand 4	F	55	58	anti-parallel
Strand 5	F	68	70	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	40	41	first strand
Strand 2	F	76	77	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	106	108	first strand
Strand 2	F	122	124	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	146	first strand
Strand 2	F	131	138	anti-parallel
Strand 3	F	163	171	anti-parallel
Strand 4	F	182	184	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	146	first strand
Strand 2	F	131	138	anti-parallel
Strand 3	F	163	171	anti-parallel
Strand 4	F	175	178	anti-parallel
Strand 5	J	4	9	parallel
Strand 6	J	15	22	anti-parallel
Strand 7	J	32	41	anti-parallel
Strand 8	D	457	464	parallel
Strand 9	C	457	462	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	225	229	first strand
Strand 2	F	261	265	anti-parallel
Strand 3	F	271	272	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	247	249	first strand
Strand 2	A	264	267	anti-parallel
Strand 3	A	306	308	anti-parallel
Strand 4	A	290	291	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	321	324	anti-parallel
Strand 3	A	336	338	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	364	374	anti-parallel
Strand 3	A	411	420	anti-parallel
Strand 4	A	395	397	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	352	first strand
Strand 2	A	364	374	anti-parallel
Strand 3	A	411	420	anti-parallel
Strand 4	A	401	402	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	389	first strand
Strand 2	A	380	385	anti-parallel
Strand 3	A	430	435	anti-parallel
Strand 4	A	443	448	anti-parallel
Strand 5	J	121	127	parallel
Strand 6	J	110	116	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	460	464	first strand
Strand 2	A	460	465	parallel
Strand 3	J	59	63	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	264	265	first strand
Strand 2	B	307	308	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	368	374	anti-parallel
Strand 3	B	411	416	anti-parallel
Strand 4	B	396	397	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	352	first strand
Strand 2	B	368	374	anti-parallel
Strand 3	B	411	416	anti-parallel
Strand 4	B	401	402	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	364	365	first strand
Strand 2	B	419	420	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	380	385	anti-parallel
Strand 3	B	430	435	anti-parallel
Strand 4	B	443	448	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	246	249	first strand
Strand 2	C	265	268	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	281	first strand
Strand 2	C	321	324	anti-parallel
Strand 3	C	335	338	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	352	first strand
Strand 2	C	364	374	anti-parallel
Strand 3	C	411	420	anti-parallel
Strand 4	C	395	397	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	352	first strand
Strand 2	C	364	374	anti-parallel
Strand 3	C	411	420	anti-parallel
Strand 4	C	401	402	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	380	381	first strand
Strand 2	C	434	435	anti-parallel
Strand 3	C	443	444	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	384	385	first strand
Strand 2	C	388	389	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	247	248	first strand
Strand 2	D	264	267	anti-parallel
Strand 3	D	305	308	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	321	325	first strand
Strand 2	D	334	338	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	352	first strand
Strand 2	D	364	374	anti-parallel
Strand 3	D	411	420	anti-parallel
Strand 4	D	395	397	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	352	first strand
Strand 2	D	364	374	anti-parallel
Strand 3	D	411	420	anti-parallel
Strand 4	D	401	402	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	388	389	first strand
Strand 2	D	380	385	anti-parallel
Strand 3	D	430	435	anti-parallel
Strand 4	D	443	448	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	470	471	first strand
Strand 2	J	103	104	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	74	77	first strand
Strand 2	J	82	85	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MBZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MBZ