Analysis of interatomic Contacts of Structural Units in PDB entry:
9MC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MC1 entry

There is 1 chain in PDB entry 9MC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2ILE 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9MC1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 55Right-handed alpha
Helix 2
AA2
A
84 89Right-handed alpha
Helix 3
AA3
A
149 155Right-handed alpha
Helix 4
AA4
A
156 169Right-handed alpha
Helix 5
AA5
A
172 176Right-handed 310
Helix 6
AA6
A
189 203Right-handed alpha
Helix 7
AA7
A
212 223Right-handed alpha
Helix 8
AA8
A
234 243Right-handed alpha
Helix 9
AA9
A
260 266Right-handed alpha
Helix 10
AB1
A
289 295Right-handed alpha
Helix 11
AB2
A
306 321Right-handed alpha
Helix 12
AB3
A
335 348Right-handed alpha
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There are 4 sheets in PDB entry 9MC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
21 25anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
36 46anti-parallel
Strand 3
A
70 78anti-parallel
Strand 4
A
92 95anti-parallel
Strand 5
A
141 143anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 137first strand
Strand 2
A
36 46anti-parallel
Strand 3
A
354 358anti-parallel
Strand 4
A
326 331parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 229first strand
Strand 2
A
205 210parallel
Strand 3
A
181 184parallel
Strand 4
A
250 255parallel
Strand 5
A
269 277parallel
Strand 6
A
298 301parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il