Analysis of interatomic Contacts of Structural Units in PDB entry:
9MC4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MC4 entry

There are 3 chains in PDB entry 9MC4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 52ARG 1058
B
 GLU 927MET 1285
C
 SER 0GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9MC4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 63Right-handed alpha
Helix 2
AA2
A
63 72Right-handed alpha
Helix 3
AA3
A
82 94Right-handed alpha
Helix 4
AA4
A
108 114Right-handed 310
Helix 5
AA5
A
119 123Right-handed 310
Helix 6
AA6
A
126 136Right-handed alpha
Helix 7
AA7
A
152 157Right-handed alpha
Helix 8
AA8
A
168 183Right-handed alpha
Helix 9
AA9
A
256 260Right-handed 310
Helix 10
AB1
A
305 312Right-handed alpha
Helix 11
AB2
A
319 323Right-handed 310
Helix 12
AB3
A
324 344Right-handed alpha
Helix 13
AB4
A
351 369Right-handed alpha
Helix 14
AB5
A
379 390Right-handed alpha
Helix 15
AB6
A
394 415Right-handed alpha
Helix 16
AB7
A
429 432Right-handed 310
Helix 17
AB8
A
441 445Right-handed 310
Helix 18
AB9
A
451 468Right-handed alpha
Helix 19
AC1
A
478 491Right-handed alpha
Helix 20
AC2
A
509 515Right-handed 310
Helix 21
AC3
A
520 524Right-handed 310
Helix 22
AC4
A
527 540Right-handed alpha
Helix 23
AC5
A
553 557Right-handed 310
Helix 24
AC6
A
561 567Right-handed alpha
Helix 25
AC7
A
577 592Right-handed alpha
Helix 26
AC8
A
617 621Right-handed 310
Helix 27
AC9
A
630 637Right-handed alpha
Helix 28
AD1
A
640 669Right-handed alpha
Helix 29
AD2
A
671 678Right-handed alpha
Helix 30
AD3
A
681 696Right-handed alpha
Helix 31
AD4
A
702 719Right-handed alpha
Helix 32
AD5
A
719 729Right-handed alpha
Helix 33
AD6
A
758 776Right-handed alpha
Helix 34
AD7
A
785 794Right-handed alpha
Helix 35
AD8
A
825 833Right-handed alpha
Helix 36
AD9
A
856 873Right-handed alpha
Helix 37
AE1
A
879 889Right-handed alpha
Helix 38
AE2
A
894 915Right-handed alpha
Helix 39
AE3
A
918 922Right-handed 310
Helix 40
AE4
A
971 983Right-handed alpha
Helix 41
AE5
A
1003 1012Right-handed alpha
Helix 42
AE6
A
1014 1024Right-handed alpha
Helix 43
AE7
B
950 969Right-handed alpha
Helix 44
AE8
B
1041 1045Right-handed 310
Helix 45
AE9
B
1050 1054Right-handed 310
Helix 46
AF1
B
1060 1071Right-handed alpha
Helix 47
AF2
B
1076 1081Right-handed 310
Helix 48
AF3
B
1083 1088Right-handed 310
Helix 49
AF4
B
1090 1118Right-handed alpha
Helix 50
AF5
B
1120 1122Right-handed 310
Helix 51
AF6
B
1123 1151Right-handed alpha
Helix 52
AF7
B
1262 1283Right-handed alpha
Helix 53
AF8
C
22 35Right-handed alpha
Helix 54
AF9
C
37 41Right-handed 310
Helix 55
AG1
C
56 60Right-handed 310
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There are 9 sheets in PDB entry 9MC4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
98 102parallel
Strand 3
A
74 78parallel
Strand 4
A
161 165parallel
Strand 5
A
185 192parallel
Strand 6
A
195 201anti-parallel
Strand 7
A
424 427anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
299 301anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
247 251anti-parallel
Strand 3
A
291 295anti-parallel
Strand 4
A
218 223anti-parallel
Strand 5
A
231 234anti-parallel
Strand 6
A
274 276anti-parallel
Strand 7
A
268 271anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 548first strand
Strand 2
A
499 503parallel
Strand 3
A
470 474parallel
Strand 4
A
570 573parallel
Strand 5
A
595 601parallel
Strand 6
A
604 610anti-parallel
Strand 7
A
924 928anti-parallel
Strand 8
A
933 937anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
945 947first strand
Strand 2
A
950 952anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1053 1056parallel
Strand 3
A
1033 1041anti-parallel
Strand 4
A
986 992anti-parallel
Strand 5
A
995 999anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1053 1056parallel
Strand 3
A
1033 1041anti-parallel
Strand 4
A
1047 1048anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
929 932first strand
Strand 2
B
973 978parallel
Strand 3
B
984 990anti-parallel
Strand 4
B
1001 1007anti-parallel
Strand 5
B
1018 1022anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 17first strand
Strand 2
C
1 7anti-parallel
Strand 3
C
66 70parallel
Strand 4
C
42 45anti-parallel
Strand 5
C
48 49anti-parallel
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