Analysis of interatomic Contacts of Structural Units in PDB entry:
9MC5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MC5 entry

There are 3 chains in PDB entry 9MC5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 73ARG 1058
B
 GLU 927MET 1285
C
 SER 0GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9MC5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 95Right-handed alpha
Helix 2
AA2
A
108 114Right-handed 310
Helix 3
AA3
A
119 123Right-handed 310
Helix 4
AA4
A
126 137Right-handed alpha
Helix 5
AA5
A
152 158Right-handed alpha
Helix 6
AA6
A
168 183Right-handed alpha
Helix 7
AA7
A
256 260Right-handed 310
Helix 8
AA8
A
305 312Right-handed alpha
Helix 9
AA9
A
319 323Right-handed 310
Helix 10
AB1
A
324 344Right-handed alpha
Helix 11
AB2
A
351 369Right-handed alpha
Helix 12
AB3
A
379 389Right-handed alpha
Helix 13
AB4
A
394 415Right-handed alpha
Helix 14
AB5
A
429 432Right-handed 310
Helix 15
AB6
A
435 439Right-handed 310
Helix 16
AB7
A
451 459Right-handed alpha
Helix 17
AB8
A
460 469Right-handed alpha
Helix 18
AB9
A
477 491Right-handed alpha
Helix 19
AC1
A
512 516Right-handed 310
Helix 20
AC2
A
520 524Right-handed 310
Helix 21
AC3
A
527 540Right-handed alpha
Helix 22
AC4
A
553 557Right-handed 310
Helix 23
AC5
A
561 567Right-handed alpha
Helix 24
AC6
A
577 592Right-handed alpha
Helix 25
AC7
A
617 621Right-handed 310
Helix 26
AC8
A
640 669Right-handed alpha
Helix 27
AC9
A
671 679Right-handed alpha
Helix 28
AD1
A
682 698Right-handed alpha
Helix 29
AD2
A
702 718Right-handed alpha
Helix 30
AD3
A
718 728Right-handed alpha
Helix 31
AD4
A
758 776Right-handed alpha
Helix 32
AD5
A
783 792Right-handed alpha
Helix 33
AD6
A
823 833Right-handed alpha
Helix 34
AD7
A
835 839Right-handed 310
Helix 35
AD8
A
857 873Right-handed alpha
Helix 36
AD9
A
879 888Right-handed alpha
Helix 37
AE1
A
894 915Right-handed alpha
Helix 38
AE2
A
971 982Right-handed alpha
Helix 39
AE3
A
1003 1011Right-handed alpha
Helix 40
AE4
A
1014 1024Right-handed alpha
Helix 41
AE5
B
950 969Right-handed alpha
Helix 42
AE6
B
1050 1054Right-handed 310
Helix 43
AE7
B
1060 1073Right-handed alpha
Helix 44
AE8
B
1076 1081Right-handed 310
Helix 45
AE9
B
1090 1118Right-handed alpha
Helix 46
AF1
B
1123 1131Right-handed alpha
Helix 47
AF2
B
1132 1151Right-handed alpha
Helix 48
AF3
B
1265 1284Right-handed alpha
Helix 49
AF4
C
22 35Right-handed alpha
Helix 50
AF5
C
37 41Right-handed 310
Helix 51
AF6
C
55 60Right-handed 310
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There are 9 sheets in PDB entry 9MC5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
98 102parallel
Strand 3
A
74 78parallel
Strand 4
A
161 164parallel
Strand 5
A
185 192parallel
Strand 6
A
195 201anti-parallel
Strand 7
A
424 427anti-parallel
Strand 8
A
316 317parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
299 301anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
247 251anti-parallel
Strand 3
A
291 294anti-parallel
Strand 4
A
218 224anti-parallel
Strand 5
A
232 234anti-parallel
Strand 6
A
274 276anti-parallel
Strand 7
A
268 269anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 548first strand
Strand 2
A
499 503parallel
Strand 3
A
470 474parallel
Strand 4
A
570 573parallel
Strand 5
A
595 601parallel
Strand 6
A
604 610anti-parallel
Strand 7
A
924 928anti-parallel
Strand 8
A
933 937anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
945 947first strand
Strand 2
A
950 952anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1053 1056parallel
Strand 3
A
1033 1041anti-parallel
Strand 4
A
986 992anti-parallel
Strand 5
A
995 999anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1053 1056parallel
Strand 3
A
1033 1041anti-parallel
Strand 4
A
1047 1048anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
929 932first strand
Strand 2
B
973 978parallel
Strand 3
B
984 990anti-parallel
Strand 4
B
1001 1007anti-parallel
Strand 5
B
1018 1021anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 17first strand
Strand 2
C
1 7anti-parallel
Strand 3
C
66 70parallel
Strand 4
C
42 45anti-parallel
Strand 5
C
48 49anti-parallel
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