Analysis of interatomic Contacts of Structural Units in PDB entry:
9MC6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MC6 entry

There are 3 chains in PDB entry 9MC6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 73	ARG 1058
B	VAL 928	MET 1285
C	MET 1	GLY 76

There are 44 helices in PDB entry 9MC6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	81	93	Right-handed alpha
Helix 2	AA2	A	108	114	Right-handed 310
Helix 3	AA3	A	119	123	Right-handed 310
Helix 4	AA4	A	126	137	Right-handed alpha
Helix 5	AA5	A	152	158	Right-handed alpha
Helix 6	AA6	A	168	183	Right-handed alpha
Helix 7	AA7	A	305	312	Right-handed alpha
Helix 8	AA8	A	319	323	Right-handed 310
Helix 9	AA9	A	324	344	Right-handed alpha
Helix 10	AB1	A	351	369	Right-handed alpha
Helix 11	AB2	A	379	390	Right-handed alpha
Helix 12	AB3	A	394	415	Right-handed alpha
Helix 13	AB4	A	429	432	Right-handed 310
Helix 14	AB5	A	451	468	Right-handed alpha
Helix 15	AB6	A	477	491	Right-handed alpha
Helix 16	AB7	A	509	513	Right-handed 310
Helix 17	AB8	A	527	540	Right-handed alpha
Helix 18	AB9	A	553	557	Right-handed 310
Helix 19	AC1	A	561	566	Right-handed alpha
Helix 20	AC2	A	577	592	Right-handed alpha
Helix 21	AC3	A	632	636	Right-handed alpha
Helix 22	AC4	A	640	669	Right-handed alpha
Helix 23	AC5	A	671	680	Right-handed alpha
Helix 24	AC6	A	683	696	Right-handed alpha
Helix 25	AC7	A	702	718	Right-handed alpha
Helix 26	AC8	A	720	729	Right-handed alpha
Helix 27	AC9	A	758	776	Right-handed alpha
Helix 28	AD1	A	783	794	Right-handed alpha
Helix 29	AD2	A	822	833	Right-handed alpha
Helix 30	AD3	A	857	870	Right-handed alpha
Helix 31	AD4	A	879	890	Right-handed alpha
Helix 32	AD5	A	894	914	Right-handed alpha
Helix 33	AD6	A	971	982	Right-handed alpha
Helix 34	AD7	A	1003	1012	Right-handed alpha
Helix 35	AD8	A	1014	1024	Right-handed alpha
Helix 36	AD9	B	950	969	Right-handed alpha
Helix 37	AE1	B	1050	1054	Right-handed 310
Helix 38	AE2	B	1060	1074	Right-handed alpha
Helix 39	AE3	B	1076	1081	Right-handed alpha
Helix 40	AE4	B	1084	1088	Right-handed 310
Helix 41	AE5	B	1090	1118	Right-handed alpha
Helix 42	AE6	B	1123	1152	Right-handed alpha
Helix 43	AE7	B	1263	1283	Right-handed alpha
Helix 44	AE8	C	22	35	Right-handed alpha

There are 11 sheets in PDB entry 9MC6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	147	first strand
Strand 2	A	98	102	parallel
Strand 3	A	74	78	parallel
Strand 4	A	161	164	parallel
Strand 5	A	185	192	parallel
Strand 6	A	195	201	anti-parallel
Strand 7	A	424	427	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	208	first strand
Strand 2	A	299	301	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	218	220	first strand
Strand 2	A	291	293	anti-parallel
Strand 3	A	247	251	anti-parallel
Strand 4	A	265	266	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	223	224	first strand
Strand 2	A	231	233	anti-parallel
Strand 3	A	274	276	anti-parallel
Strand 4	A	268	269	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	255	first strand
Strand 2	A	287	288	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	548	first strand
Strand 2	A	499	503	parallel
Strand 3	A	470	474	parallel
Strand 4	A	570	573	parallel
Strand 5	A	595	601	parallel
Strand 6	A	604	610	anti-parallel
Strand 7	A	924	928	anti-parallel
Strand 8	A	933	937	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	945	947	first strand
Strand 2	A	950	952	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	958	961	first strand
Strand 2	A	1053	1056	parallel
Strand 3	A	1033	1041	anti-parallel
Strand 4	A	986	992	anti-parallel
Strand 5	A	995	999	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	958	961	first strand
Strand 2	A	1053	1056	parallel
Strand 3	A	1033	1041	anti-parallel
Strand 4	A	1047	1048	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	929	932	first strand
Strand 2	B	973	978	parallel
Strand 3	B	984	990	anti-parallel
Strand 4	B	1001	1007	anti-parallel
Strand 5	B	1018	1021	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	16	first strand
Strand 2	C	2	7	anti-parallel
Strand 3	C	65	69	parallel
Strand 4	C	43	45	anti-parallel
Strand 5	C	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MC6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MC6