Analysis of interatomic Contacts of Structural Units in PDB entry:
9MCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MCB entry

There are 3 chains in PDB entry 9MCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 50ARG 1058
B
 VAL 928GLU 1290
C
 MET 1GLY 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9MCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
55 71Right-handed alpha
Helix 2
AA2
A
82 95Right-handed alpha
Helix 3
AA3
A
108 114Right-handed 310
Helix 4
AA4
A
119 123Right-handed 310
Helix 5
AA5
A
126 136Right-handed alpha
Helix 6
AA6
A
155 159Right-handed 310
Helix 7
AA7
A
168 182Right-handed alpha
Helix 8
AA8
A
305 312Right-handed alpha
Helix 9
AA9
A
319 323Right-handed 310
Helix 10
AB1
A
324 344Right-handed alpha
Helix 11
AB2
A
351 369Right-handed alpha
Helix 12
AB3
A
379 389Right-handed alpha
Helix 13
AB4
A
394 415Right-handed alpha
Helix 14
AB5
A
429 432Right-handed 310
Helix 15
AB6
A
440 445Right-handed 310
Helix 16
AB7
A
451 459Right-handed alpha
Helix 17
AB8
A
460 469Right-handed alpha
Helix 18
AB9
A
477 491Right-handed alpha
Helix 19
AC1
A
509 515Right-handed 310
Helix 20
AC2
A
520 524Right-handed 310
Helix 21
AC3
A
527 540Right-handed alpha
Helix 22
AC4
A
561 568Right-handed alpha
Helix 23
AC5
A
577 592Right-handed alpha
Helix 24
AC6
A
617 621Right-handed 310
Helix 25
AC7
A
630 636Right-handed alpha
Helix 26
AC8
A
640 657Right-handed alpha
Helix 27
AC9
A
657 669Right-handed alpha
Helix 28
AD1
A
671 678Right-handed alpha
Helix 29
AD2
A
682 696Right-handed alpha
Helix 30
AD3
A
702 719Right-handed alpha
Helix 31
AD4
A
719 729Right-handed alpha
Helix 32
AD5
A
758 762Right-handed 310
Helix 33
AD6
A
763 777Right-handed alpha
Helix 34
AD7
A
783 792Right-handed alpha
Helix 35
AD8
A
810 817Right-handed alpha
Helix 36
AD9
A
822 833Right-handed alpha
Helix 37
AE1
A
835 839Right-handed 310
Helix 38
AE2
A
857 873Right-handed alpha
Helix 39
AE3
A
879 888Right-handed alpha
Helix 40
AE4
A
894 915Right-handed alpha
Helix 41
AE5
A
918 922Right-handed 310
Helix 42
AE6
A
971 982Right-handed alpha
Helix 43
AE7
A
1003 1011Right-handed alpha
Helix 44
AE8
A
1014 1024Right-handed alpha
Helix 45
AE9
B
939 944Right-handed 310
Helix 46
AF1
B
950 969Right-handed alpha
Helix 47
AF2
B
1011 1015Right-handed 310
Helix 48
AF3
B
1060 1072Right-handed alpha
Helix 49
AF4
B
1084 1088Right-handed 310
Helix 50
AF5
B
1090 1118Right-handed alpha
Helix 51
AF6
B
1123 1131Right-handed alpha
Helix 52
AF7
B
1132 1140Right-handed alpha
Helix 53
AF8
B
1143 1152Right-handed alpha
Helix 54
AF9
B
1262 1283Right-handed alpha
Helix 55
AG1
C
22 34Right-handed alpha
Helix 56
AG2
C
37 41Right-handed 310
Helix 57
AG3
C
55 60Right-handed alpha
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There are 9 sheets in PDB entry 9MCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
98 102parallel
Strand 3
A
74 78parallel
Strand 4
A
161 165parallel
Strand 5
A
185 192parallel
Strand 6
A
195 201anti-parallel
Strand 7
A
424 427anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 208first strand
Strand 2
A
299 301anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
247 251anti-parallel
Strand 3
A
291 294anti-parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
230 234anti-parallel
Strand 6
A
274 277anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 548first strand
Strand 2
A
500 503parallel
Strand 3
A
471 474parallel
Strand 4
A
570 573parallel
Strand 5
A
595 601parallel
Strand 6
A
604 610anti-parallel
Strand 7
A
924 928anti-parallel
Strand 8
A
933 937anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
945 947first strand
Strand 2
A
950 952anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1053 1056parallel
Strand 3
A
1033 1041anti-parallel
Strand 4
A
986 992anti-parallel
Strand 5
A
995 998anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
958 961first strand
Strand 2
A
1053 1056parallel
Strand 3
A
1033 1041anti-parallel
Strand 4
A
1047 1049anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
930 932first strand
Strand 2
B
973 978parallel
Strand 3
B
984 990anti-parallel
Strand 4
B
1001 1007anti-parallel
Strand 5
B
1018 1020anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
66 70parallel
Strand 4
C
42 45anti-parallel
Strand 5
C
48 49anti-parallel
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