Analysis of interatomic Contacts of Structural Units in PDB entry:
9MDR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MDR entry

There are 7 chains in PDB entry 9MDR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 220	THR 617
B	ASP 220	THR 617
C	ASP 220	THR 617
D	ASP 220	THR 617
E	ASP 220	THR 617
F	ASP 220	THR 617
G	ASP 220	THR 617

There are 63 helices in PDB entry 9MDR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	227	234	Right-handed alpha
Helix 2	AA2	A	246	253	Right-handed 310
Helix 3	AA3	A	272	279	Right-handed alpha
Helix 4	AA4	A	286	291	Right-handed 310
Helix 5	AA5	A	463	473	Right-handed alpha
Helix 6	AA6	A	506	513	Right-handed alpha
Helix 7	AA7	A	546	556	Right-handed alpha
Helix 8	AA8	A	581	593	Right-handed alpha
Helix 9	AA9	A	599	603	Right-handed 310
Helix 10	AB1	B	227	234	Right-handed alpha
Helix 11	AB2	B	246	253	Right-handed 310
Helix 12	AB3	B	272	279	Right-handed alpha
Helix 13	AB4	B	286	291	Right-handed 310
Helix 14	AB5	B	463	473	Right-handed alpha
Helix 15	AB6	B	506	513	Right-handed alpha
Helix 16	AB7	B	546	556	Right-handed alpha
Helix 17	AB8	B	581	593	Right-handed alpha
Helix 18	AB9	B	599	603	Right-handed 310
Helix 19	AC1	C	227	234	Right-handed alpha
Helix 20	AC2	C	246	253	Right-handed 310
Helix 21	AC3	C	272	279	Right-handed alpha
Helix 22	AC4	C	286	291	Right-handed 310
Helix 23	AC5	C	463	473	Right-handed alpha
Helix 24	AC6	C	506	513	Right-handed alpha
Helix 25	AC7	C	546	556	Right-handed alpha
Helix 26	AC8	C	581	593	Right-handed alpha
Helix 27	AC9	C	599	603	Right-handed 310
Helix 28	AD1	D	227	234	Right-handed alpha
Helix 29	AD2	D	246	253	Right-handed 310
Helix 30	AD3	D	272	279	Right-handed alpha
Helix 31	AD4	D	286	291	Right-handed 310
Helix 32	AD5	D	463	473	Right-handed alpha
Helix 33	AD6	D	506	513	Right-handed alpha
Helix 34	AD7	D	546	556	Right-handed alpha
Helix 35	AD8	D	581	593	Right-handed alpha
Helix 36	AD9	D	599	603	Right-handed 310
Helix 37	AE1	E	227	234	Right-handed alpha
Helix 38	AE2	E	246	253	Right-handed 310
Helix 39	AE3	E	272	279	Right-handed alpha
Helix 40	AE4	E	286	291	Right-handed 310
Helix 41	AE5	E	463	473	Right-handed alpha
Helix 42	AE6	E	506	513	Right-handed alpha
Helix 43	AE7	E	546	556	Right-handed alpha
Helix 44	AE8	E	581	593	Right-handed alpha
Helix 45	AE9	E	599	603	Right-handed 310
Helix 46	AF1	F	227	234	Right-handed alpha
Helix 47	AF2	F	246	253	Right-handed 310
Helix 48	AF3	F	272	279	Right-handed alpha
Helix 49	AF4	F	286	291	Right-handed 310
Helix 50	AF5	F	463	473	Right-handed alpha
Helix 51	AF6	F	506	513	Right-handed alpha
Helix 52	AF7	F	546	556	Right-handed alpha
Helix 53	AF8	F	581	593	Right-handed alpha
Helix 54	AF9	F	599	603	Right-handed 310
Helix 55	AG1	G	227	234	Right-handed alpha
Helix 56	AG2	G	246	253	Right-handed 310
Helix 57	AG3	G	272	279	Right-handed alpha
Helix 58	AG4	G	286	291	Right-handed 310
Helix 59	AG5	G	463	473	Right-handed alpha
Helix 60	AG6	G	506	513	Right-handed alpha
Helix 61	AG7	G	546	556	Right-handed alpha
Helix 62	AG8	G	581	593	Right-handed alpha
Helix 63	AG9	G	599	603	Right-handed 310

There are 56 sheets in PDB entry 9MDR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	238	first strand
Strand 2	A	241	244	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	311	first strand
Strand 2	A	387	399	anti-parallel
Strand 3	A	447	449	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	311	first strand
Strand 2	A	387	399	anti-parallel
Strand 3	A	461	462	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	406	first strand
Strand 2	A	430	433	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	423	first strand
Strand 2	A	408	413	anti-parallel
Strand 3	A	477	483	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	489	490	first strand
Strand 2	A	496	497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	525	531	first strand
Strand 2	A	514	520	anti-parallel
Strand 3	A	610	614	parallel
Strand 4	A	577	579	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	560	first strand
Strand 2	A	563	564	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	238	first strand
Strand 2	B	241	244	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	311	first strand
Strand 2	B	387	399	anti-parallel
Strand 3	B	447	449	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	311	first strand
Strand 2	B	387	399	anti-parallel
Strand 3	B	461	462	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	406	first strand
Strand 2	B	430	433	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	423	first strand
Strand 2	B	408	413	anti-parallel
Strand 3	B	477	483	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	489	490	first strand
Strand 2	B	496	497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	525	531	first strand
Strand 2	B	514	520	anti-parallel
Strand 3	B	610	614	parallel
Strand 4	B	577	579	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	559	560	first strand
Strand 2	B	563	564	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	235	238	first strand
Strand 2	C	241	244	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	311	first strand
Strand 2	C	387	399	anti-parallel
Strand 3	C	447	449	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	311	first strand
Strand 2	C	387	399	anti-parallel
Strand 3	C	461	462	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	406	first strand
Strand 2	C	430	433	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	423	first strand
Strand 2	C	408	413	anti-parallel
Strand 3	C	477	483	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	489	490	first strand
Strand 2	C	496	497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	525	531	first strand
Strand 2	C	514	520	anti-parallel
Strand 3	C	610	614	parallel
Strand 4	C	577	579	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	560	first strand
Strand 2	C	563	564	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	235	238	first strand
Strand 2	D	241	244	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	311	first strand
Strand 2	D	387	399	anti-parallel
Strand 3	D	447	449	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	311	first strand
Strand 2	D	387	399	anti-parallel
Strand 3	D	461	462	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	406	first strand
Strand 2	D	430	433	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	423	first strand
Strand 2	D	408	413	anti-parallel
Strand 3	D	477	483	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	489	490	first strand
Strand 2	D	496	497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	525	531	first strand
Strand 2	D	514	520	anti-parallel
Strand 3	D	610	614	parallel
Strand 4	D	577	579	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	559	560	first strand
Strand 2	D	563	564	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	235	238	first strand
Strand 2	E	241	244	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	311	first strand
Strand 2	E	387	399	anti-parallel
Strand 3	E	447	449	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	298	311	first strand
Strand 2	E	387	399	anti-parallel
Strand 3	E	461	462	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	403	406	first strand
Strand 2	E	430	433	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	418	423	first strand
Strand 2	E	408	413	anti-parallel
Strand 3	E	477	483	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	489	490	first strand
Strand 2	E	496	497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	525	531	first strand
Strand 2	E	514	520	anti-parallel
Strand 3	E	610	614	parallel
Strand 4	E	577	579	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	559	560	first strand
Strand 2	E	563	564	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	235	238	first strand
Strand 2	F	241	244	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	311	first strand
Strand 2	F	387	399	anti-parallel
Strand 3	F	447	449	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	298	311	first strand
Strand 2	F	387	399	anti-parallel
Strand 3	F	461	462	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	403	406	first strand
Strand 2	F	430	433	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	418	423	first strand
Strand 2	F	408	413	anti-parallel
Strand 3	F	477	483	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	489	490	first strand
Strand 2	F	496	497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	525	531	first strand
Strand 2	F	514	520	anti-parallel
Strand 3	F	610	614	parallel
Strand 4	F	577	579	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	559	560	first strand
Strand 2	F	563	564	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	235	238	first strand
Strand 2	G	241	244	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	298	311	first strand
Strand 2	G	387	399	anti-parallel
Strand 3	G	447	449	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	298	311	first strand
Strand 2	G	387	399	anti-parallel
Strand 3	G	461	462	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	403	406	first strand
Strand 2	G	430	433	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	418	423	first strand
Strand 2	G	408	413	anti-parallel
Strand 3	G	477	483	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	489	490	first strand
Strand 2	G	496	497	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	525	531	first strand
Strand 2	G	514	520	anti-parallel
Strand 3	G	610	614	parallel
Strand 4	G	577	579	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	559	560	first strand
Strand 2	G	563	564	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MDR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MDR