Analysis of interatomic Contacts of Structural Units in PDB entry:
9MDU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MDU entry

There are 4 chains in PDB entry 9MDU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 25LEU 305
A
 GLU 26GLY 306
C
 LYS 25LEU 305
D
 LYS 25LEU 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9MDU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
36 65Right-handed alpha
Helix 2
AA2
B
72 100Right-handed alpha
Helix 3
AA3
B
104 139Right-handed alpha
Helix 4
AA4
B
146 154Right-handed alpha
Helix 5
AA5
B
154 167Right-handed alpha
Helix 6
AA6
B
168 174Right-handed alpha
Helix 7
AA7
B
192 227Right-handed alpha
Helix 8
AA8
B
236 267Right-handed alpha
Helix 9
AA9
B
273 292Right-handed alpha
Helix 10
AB1
B
293 304Right-handed alpha
Helix 11
AB2
A
35 38Right-handed 310
Helix 12
AB3
A
39 63Right-handed alpha
Helix 13
AB4
A
72 100Right-handed alpha
Helix 14
AB5
A
105 139Right-handed alpha
Helix 15
AB6
A
145 154Right-handed alpha
Helix 16
AB7
A
154 167Right-handed alpha
Helix 17
AB8
A
168 174Right-handed alpha
Helix 18
AB9
A
192 229Right-handed alpha
Helix 19
AC1
A
239 267Right-handed alpha
Helix 20
AC2
A
274 291Right-handed alpha
Helix 21
AC3
A
292 296Right-handed 310
Helix 22
AC4
A
297 303Right-handed alpha
Helix 23
AC5
C
40 63Right-handed alpha
Helix 24
AC6
C
73 100Right-handed alpha
Helix 25
AC7
C
105 139Right-handed alpha
Helix 26
AC8
C
145 154Right-handed alpha
Helix 27
AC9
C
154 167Right-handed alpha
Helix 28
AD1
C
168 174Right-handed alpha
Helix 29
AD2
C
192 209Right-handed alpha
Helix 30
AD3
C
209 224Right-handed alpha
Helix 31
AD4
C
237 267Right-handed alpha
Helix 32
AD5
C
281 292Right-handed alpha
Helix 33
AD6
C
293 295Right-handed 310
Helix 34
AD7
C
296 304Right-handed alpha
Helix 35
AD8
D
36 63Right-handed alpha
Helix 36
AD9
D
71 100Right-handed alpha
Helix 37
AE1
D
105 139Right-handed alpha
Helix 38
AE2
D
145 167Right-handed alpha
Helix 39
AE3
D
168 174Right-handed alpha
Helix 40
AE4
D
192 226Right-handed alpha
Helix 41
AE5
D
232 238Right-handed alpha
Helix 42
AE6
D
238 267Right-handed alpha
Helix 43
AE7
D
273 292Right-handed alpha
Helix 44
AE8
D
293 295Right-handed 310
Helix 45
AE9
D
296 305Right-handed alpha
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There are 4 sheets in PDB entry 9MDU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
185 188anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 178first strand
Strand 2
A
185 188anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
175 180first strand
Strand 2
C
183 188anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
175 180first strand
Strand 2
D
183 188anti-parallel
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