Analysis of interatomic Contacts of Structural Units in PDB entry:
9ME7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9ME7 entry

There are 5 chains in PDB entry 9ME7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	THR 158
I	GLU 1	THR 208
J	GLU 1	SER 198
M	ASP 1	ARG 197
N	GLN 1	LYS 182

There are 16 helices in PDB entry 9ME7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	70	Right-handed alpha
Helix 2	AA2	I	28	32	Right-handed 310
Helix 3	AA3	I	62	65	Right-handed 310
Helix 4	AA4	I	87	91	Right-handed 310
Helix 5	AA5	I	160	162	Right-handed 310
Helix 6	AA6	I	203	207	Right-handed 310
Helix 7	AA7	J	28	32	Right-handed 310
Helix 8	AA8	J	62	65	Right-handed 310
Helix 9	AA9	J	74	76	Right-handed 310
Helix 10	AB1	J	87	91	Right-handed 310
Helix 11	AB2	J	166	170	Right-handed 310
Helix 12	AB3	M	79	83	Right-handed 310
Helix 13	AB4	M	121	127	Right-handed alpha
Helix 14	AB5	M	183	188	Right-handed alpha
Helix 15	AB6	N	78	82	Right-handed 310
Helix 16	AB7	N	120	127	Right-handed alpha

There are 24 sheets in PDB entry 9ME7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	2	5	anti-parallel
Strand 3	A	42	45	anti-parallel
Strand 4	A	101	102	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	22	first strand
Strand 2	A	141	150	parallel
Strand 3	A	125	135	anti-parallel
Strand 4	A	54	63	anti-parallel
Strand 5	A	93	95	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	37	first strand
Strand 2	A	105	111	anti-parallel
Strand 3	A	71	77	anti-parallel
Strand 4	A	80	84	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	120	first strand
Strand 2	A	154	156	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	17	25	anti-parallel
Strand 3	I	78	84	anti-parallel
Strand 4	I	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	111	115	parallel
Strand 3	I	92	100	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	111	115	parallel
Strand 3	I	92	100	anti-parallel
Strand 4	I	103	107	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	128	first strand
Strand 2	I	139	149	anti-parallel
Strand 3	I	178	188	anti-parallel
Strand 4	I	167	169	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	124	128	first strand
Strand 2	I	139	149	anti-parallel
Strand 3	I	178	188	anti-parallel
Strand 4	I	173	175	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	155	158	first strand
Strand 2	I	199	202	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	119	123	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	33	40	anti-parallel
Strand 5	J	44	51	anti-parallel
Strand 6	J	58	60	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	119	123	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	112	115	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	132	136	first strand
Strand 2	J	147	157	anti-parallel
Strand 3	J	187	196	anti-parallel
Strand 4	J	175	177	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	6	first strand
Strand 2	M	19	25	anti-parallel
Strand 3	M	70	75	anti-parallel
Strand 4	M	62	67	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	33	38	anti-parallel
Strand 5	M	44	49	anti-parallel
Strand 6	M	53	54	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	13	first strand
Strand 2	M	102	106	parallel
Strand 3	M	85	90	anti-parallel
Strand 4	M	97	98	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	114	118	first strand
Strand 2	M	129	139	anti-parallel
Strand 3	M	173	182	anti-parallel
Strand 4	M	159	163	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	153	155	first strand
Strand 2	M	146	150	anti-parallel
Strand 3	M	192	196	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	4	6	first strand
Strand 2	N	19	25	anti-parallel
Strand 3	N	69	74	anti-parallel
Strand 4	N	61	66	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	14	first strand
Strand 2	N	101	106	parallel
Strand 3	N	84	89	anti-parallel
Strand 4	N	33	37	anti-parallel
Strand 5	N	44	48	anti-parallel
Strand 6	N	52	53	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	10	14	first strand
Strand 2	N	101	106	parallel
Strand 3	N	84	89	anti-parallel
Strand 4	N	96	97	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	113	117	first strand
Strand 2	N	129	138	anti-parallel
Strand 3	N	172	180	anti-parallel
Strand 4	N	158	162	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	147	149	first strand
Strand 2	N	152	154	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9ME7

Analysis of interatomic Contacts of Structural Units in PDB entry:
9ME7