Analysis of interatomic Contacts of Structural Units in PDB entry:
9ME8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ME8 entry

There are 2 chains in PDB entry 9ME8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1VAL 1574
B
 ALA 764GLU 781
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9ME8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 32Right-handed alpha
Helix 2
AA2
A
42 52Right-handed alpha
Helix 3
AA3
A
66 73Right-handed alpha
Helix 4
AA4
A
82 88Right-handed alpha
Helix 5
AA5
A
90 97Right-handed alpha
Helix 6
AA6
A
128 130Right-handed 310
Helix 7
AA7
A
131 143Right-handed alpha
Helix 8
AA8
A
153 164Right-handed alpha
Helix 9
AA9
A
185 201Right-handed alpha
Helix 10
AB1
A
209 219Right-handed alpha
Helix 11
AB2
A
228 230Right-handed 310
Helix 12
AB3
A
231 237Right-handed alpha
Helix 13
AB4
A
272 283Right-handed alpha
Helix 14
AB5
A
286 297Right-handed alpha
Helix 15
AB6
A
304 312Right-handed alpha
Helix 16
AB7
A
314 327Right-handed alpha
Helix 17
AB8
A
334 352Right-handed alpha
Helix 18
AB9
A
356 369Right-handed alpha
Helix 19
AC1
A
1311 1329Right-handed alpha
Helix 20
AC2
A
1335 1348Right-handed alpha
Helix 21
AC3
A
1353 1370Right-handed alpha
Helix 22
AC4
A
1390 1394Right-handed alpha
Helix 23
AC5
A
1395 1397Right-handed 310
Helix 24
AC6
A
1403 1418Right-handed alpha
Helix 25
AC7
A
1427 1437Right-handed alpha
Helix 26
AC8
A
1438 1441Right-handed 310
Helix 27
AC9
A
1449 1453Right-handed 310
Helix 28
AD1
A
1489 1506Right-handed alpha
Helix 29
AD2
A
1508 1512Right-handed 310
Helix 30
AD3
A
1531 1546Right-handed alpha
Helix 31
AD4
A
1552 1554Right-handed 310
Helix 32
AD5
A
1555 1570Right-handed alpha
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There are 9 sheets in PDB entry 9ME8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
7 10parallel
Strand 3
A
59 63parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
105 111anti-parallel
Strand 6
A
301 302anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 38first strand
Strand 2
A
7 10parallel
Strand 3
A
59 63parallel
Strand 4
A
258 266anti-parallel
Strand 5
A
328 329parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 99first strand
Strand 2
A
102 103anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 147first strand
Strand 2
A
222 227parallel
Strand 3
A
114 118anti-parallel
Strand 4
A
242 245anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
175 182anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 250first strand
Strand 2
A
253 254anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1380 1383first strand
Strand 2
A
1386 1389anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1422 1424first strand
Strand 2
A
1455 1462parallel
Strand 3
A
1465 1472anti-parallel
Strand 4
A
1477 1481anti-parallel
Strand 5
A
1516 1519parallel
Strand 6
B
776 778anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1486 1488first strand
Strand 2
B
765 767anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il