Analysis of interatomic Contacts of Structural Units in PDB entry:
9ME9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9ME9 entry

There is 1 chain in PDB entry 9ME9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 22LEU 909
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 9ME9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 33Right-handed alpha
Helix 2
AA2
A
34 43Right-handed alpha
Helix 3
AA3
A
50 61Right-handed alpha
Helix 4
AA4
A
73 82Right-handed alpha
Helix 5
AA5
A
84 102Right-handed alpha
Helix 6
AA6
A
111 136Right-handed alpha
Helix 7
AA7
A
166 168Right-handed 310
Helix 8
AA8
A
198 203Right-handed alpha
Helix 9
AA9
A
247 250Right-handed 310
Helix 10
AB1
A
251 257Right-handed alpha
Helix 11
AB2
A
268 299Right-handed alpha
Helix 12
AB3
A
301 317Right-handed alpha
Helix 13
AB4
A
320 339Right-handed alpha
Helix 14
AB5
A
346 354Right-handed alpha
Helix 15
AB6
A
385 397Right-handed alpha
Helix 16
AB7
A
403 416Right-handed alpha
Helix 17
AB8
A
454 458Right-handed 310
Helix 18
AB9
A
467 472Right-handed alpha
Helix 19
AC1
A
488 505Right-handed alpha
Helix 20
AC2
A
525 529Right-handed 310
Helix 21
AC3
A
547 558Right-handed alpha
Helix 22
AC4
A
569 581Right-handed alpha
Helix 23
AC5
A
589 596Right-handed alpha
Helix 24
AC6
A
597 607Right-handed alpha
Helix 25
AC7
A
615 629Right-handed alpha
Helix 26
AC8
A
639 641Right-handed 310
Helix 27
AC9
A
642 649Right-handed alpha
Helix 28
AD1
A
659 665Right-handed alpha
Helix 29
AD2
A
674 713Right-handed alpha
Helix 30
AD3
A
723 739Right-handed alpha
Helix 31
AD4
A
740 744Right-handed 310
Helix 32
AD5
A
747 753Right-handed alpha
Helix 33
AD6
A
759 787Right-handed alpha
Helix 34
AD7
A
787 794Right-handed alpha
Helix 35
AD8
A
803 834Right-handed alpha
Helix 36
AD9
A
845 862Right-handed alpha
Helix 37
AE1
A
865 872Right-handed alpha
Helix 38
AE2
A
879 907Right-handed alpha
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There are 5 sheets in PDB entry 9ME9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 164first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
234 246anti-parallel
Strand 5
A
185 197anti-parallel
Strand 6
A
208 210anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 164first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
173 176anti-parallel
Strand 4
A
234 246anti-parallel
Strand 5
A
185 197anti-parallel
Strand 6
A
228 229anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
668 670anti-parallel
Strand 3
A
651 655parallel
Strand 4
A
633 636parallel
Strand 5
A
357 360parallel
Strand 6
A
561 565parallel
Strand 7
A
610 611parallel
Strand 8
A
587 588parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 377first strand
Strand 2
A
532 541anti-parallel
Strand 3
A
508 515anti-parallel
Strand 4
A
460 466anti-parallel
Strand 5
A
444 451anti-parallel
Strand 6
A
430 436anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
373 377first strand
Strand 2
A
532 541anti-parallel
Strand 3
A
475 480parallel
Strand 4
A
483 486anti-parallel
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