Analysis of interatomic Contacts of Structural Units in PDB entry:
9MEJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MEJ entry

There are 5 chains in PDB entry 9MEJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 26	GLY 306
B	LYS 25	LEU 305
C	LYS 25	LEU 305
D	LYS 25	LEU 305
E	PRO 31	ILE 477

There are 57 helices in PDB entry 9MEJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	36	64	Right-handed alpha
Helix 2	AA2	A	72	89	Right-handed alpha
Helix 3	AA3	A	90	98	Right-handed alpha
Helix 4	AA4	A	105	139	Right-handed alpha
Helix 5	AA5	A	145	154	Right-handed alpha
Helix 6	AA6	A	154	160	Right-handed alpha
Helix 7	AA7	A	160	167	Right-handed alpha
Helix 8	AA8	A	168	174	Right-handed alpha
Helix 9	AA9	A	192	208	Right-handed alpha
Helix 10	AB1	A	208	229	Right-handed alpha
Helix 11	AB2	A	237	267	Right-handed alpha
Helix 12	AB3	A	273	292	Right-handed alpha
Helix 13	AB4	A	293	296	Right-handed 310
Helix 14	AB5	A	297	305	Right-handed alpha
Helix 15	AB6	B	35	64	Right-handed alpha
Helix 16	AB7	B	72	89	Right-handed alpha
Helix 17	AB8	B	90	100	Right-handed alpha
Helix 18	AB9	B	105	139	Right-handed alpha
Helix 19	AC1	B	145	154	Right-handed alpha
Helix 20	AC2	B	154	167	Right-handed alpha
Helix 21	AC3	B	168	174	Right-handed alpha
Helix 22	AC4	B	192	209	Right-handed alpha
Helix 23	AC5	B	209	227	Right-handed alpha
Helix 24	AC6	B	234	266	Right-handed alpha
Helix 25	AC7	B	273	291	Right-handed alpha
Helix 26	AC8	B	292	295	Right-handed 310
Helix 27	AC9	B	296	304	Right-handed alpha
Helix 28	AD1	C	36	64	Right-handed alpha
Helix 29	AD2	C	72	100	Right-handed alpha
Helix 30	AD3	C	106	139	Right-handed alpha
Helix 31	AD4	C	145	154	Right-handed alpha
Helix 32	AD5	C	154	167	Right-handed alpha
Helix 33	AD6	C	168	174	Right-handed alpha
Helix 34	AD7	C	192	208	Right-handed alpha
Helix 35	AD8	C	208	227	Right-handed alpha
Helix 36	AD9	C	237	266	Right-handed alpha
Helix 37	AE1	C	273	292	Right-handed alpha
Helix 38	AE2	C	293	295	Right-handed 310
Helix 39	AE3	C	296	304	Right-handed alpha
Helix 40	AE4	D	36	64	Right-handed alpha
Helix 41	AE5	D	72	89	Right-handed alpha
Helix 42	AE6	D	90	100	Right-handed alpha
Helix 43	AE7	D	106	139	Right-handed alpha
Helix 44	AE8	D	145	154	Right-handed alpha
Helix 45	AE9	D	154	168	Right-handed alpha
Helix 46	AF1	D	168	174	Right-handed alpha
Helix 47	AF2	D	193	227	Right-handed alpha
Helix 48	AF3	D	238	266	Right-handed alpha
Helix 49	AF4	D	273	292	Right-handed alpha
Helix 50	AF5	D	293	304	Right-handed alpha
Helix 51	AF6	E	48	55	Right-handed alpha
Helix 52	AF7	E	78	96	Right-handed alpha
Helix 53	AF8	E	134	140	Right-handed alpha
Helix 54	AF9	E	331	345	Right-handed alpha
Helix 55	AG1	E	369	374	Right-handed alpha
Helix 56	AG2	E	388	397	Right-handed alpha
Helix 57	AG3	E	461	469	Right-handed alpha

There are 10 sheets in PDB entry 9MEJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	179	first strand
Strand 2	A	184	188	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	177	first strand
Strand 2	B	186	188	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	177	first strand
Strand 2	C	186	188	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	175	177	first strand
Strand 2	D	186	188	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	35	first strand
Strand 2	E	472	476	anti-parallel
Strand 3	E	221	226	anti-parallel
Strand 4	E	241	244	anti-parallel
Strand 5	E	64	67	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	56	57	first strand
Strand 2	E	41	44	parallel
Strand 3	E	212	216	anti-parallel
Strand 4	E	250	251	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	71	74	first strand
Strand 2	E	234	238	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	101	first strand
Strand 2	E	423	425	anti-parallel
Strand 3	E	414	416	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	259	260	first strand
Strand 2	E	434	448	anti-parallel
Strand 3	E	453	456	anti-parallel
Strand 4	E	359	362	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	279	283	anti-parallel
Strand 3	E	434	448	anti-parallel
Strand 4	E	291	296	anti-parallel
Strand 5	E	324	328	anti-parallel
Strand 6	E	406	411	anti-parallel
Strand 7	E	382	386	anti-parallel
Strand 8	E	377	379	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MEJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MEJ