Analysis of interatomic Contacts of Structural Units in PDB entry:
9MF0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MF0 entry

There are 6 chains in PDB entry 9MF0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	LYS 169
B	GLY 49	SER 422
C	GLY 0	LYS 169
D	GLY 49	SER 422
E	MET 1	GLU 168
F	GLY 49	PHE 153

There are 36 helices in PDB entry 9MF0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	26	Right-handed alpha
Helix 2	AA2	A	65	75	Right-handed alpha
Helix 3	AA3	A	86	92	Right-handed alpha
Helix 4	AA4	A	92	105	Right-handed alpha
Helix 5	AA5	A	126	138	Right-handed alpha
Helix 6	AA6	A	151	169	Right-handed alpha
Helix 7	AA7	B	247	251	Right-handed 310
Helix 8	AA8	B	269	276	Right-handed 310
Helix 9	AA9	C	15	26	Right-handed alpha
Helix 10	AB1	C	65	75	Right-handed alpha
Helix 11	AB2	C	86	92	Right-handed alpha
Helix 12	AB3	C	92	105	Right-handed alpha
Helix 13	AB4	C	126	138	Right-handed alpha
Helix 14	AB5	C	151	169	Right-handed alpha
Helix 15	AB6	D	247	251	Right-handed 310
Helix 16	AB7	D	269	273	Right-handed 310
Helix 17	AB8	E	15	26	Right-handed alpha
Helix 18	AB9	E	65	75	Right-handed alpha
Helix 19	AC1	E	86	92	Right-handed alpha
Helix 20	AC2	E	92	105	Right-handed alpha
Helix 21	AC3	E	126	138	Right-handed alpha
Helix 22	AC4	E	151	168	Right-handed alpha
Helix 23	AC5	F	247	251	Right-handed 310
Helix 24	AC6	G	15	26	Right-handed alpha
Helix 25	AC7	G	65	75	Right-handed alpha
Helix 26	AC8	G	86	92	Right-handed alpha
Helix 27	AC9	G	92	105	Right-handed alpha
Helix 28	AD1	G	126	138	Right-handed alpha
Helix 29	AD2	G	151	169	Right-handed alpha
Helix 30	AD3	H	247	251	Right-handed 310
Helix 31	AD4	I	15	26	Right-handed alpha
Helix 32	AD5	I	65	75	Right-handed alpha
Helix 33	AD6	I	86	105	Right-handed alpha
Helix 34	AD7	I	126	138	Right-handed alpha
Helix 35	AD8	I	151	169	Right-handed alpha
Helix 36	AD9	J	247	251	Right-handed 310

There are 40 sheets in PDB entry 9MF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	143	first strand
Strand 2	A	111	116	parallel
Strand 3	A	77	83	parallel
Strand 4	A	1	10	parallel
Strand 5	A	50	57	parallel
Strand 6	A	38	45	anti-parallel
Strand 7	F	105	106	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	412	420	anti-parallel
Strand 3	B	399	406	anti-parallel
Strand 4	B	392	396	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	76	first strand
Strand 2	B	79	86	anti-parallel
Strand 3	B	91	99	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	C	38	45	anti-parallel
Strand 3	C	50	57	anti-parallel
Strand 4	C	2	10	parallel
Strand 5	C	77	83	parallel
Strand 6	C	111	116	parallel
Strand 7	C	141	143	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	122	126	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	129	139	anti-parallel
Strand 3	B	144	156	anti-parallel
Strand 4	B	161	164	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	183	first strand
Strand 2	B	186	193	anti-parallel
Strand 3	B	198	206	anti-parallel
Strand 4	B	215	217	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	264	267	parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	239	243	anti-parallel
Strand 5	B	233	236	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	291	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	312	315	anti-parallel
Strand 4	B	320	323	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	57	first strand
Strand 2	D	416	420	anti-parallel
Strand 3	D	399	403	anti-parallel
Strand 4	D	392	396	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	76	first strand
Strand 2	D	79	86	anti-parallel
Strand 3	D	91	99	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	G	38	45	anti-parallel
Strand 3	G	50	57	anti-parallel
Strand 4	G	1	10	parallel
Strand 5	G	77	83	parallel
Strand 6	G	111	116	parallel
Strand 7	G	141	143	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	122	126	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	119	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	144	156	anti-parallel
Strand 4	D	161	164	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	183	first strand
Strand 2	D	186	193	anti-parallel
Strand 3	D	198	206	anti-parallel
Strand 4	D	215	217	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	264	267	parallel
Strand 3	D	255	259	anti-parallel
Strand 4	D	239	243	anti-parallel
Strand 5	D	233	236	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	291	first strand
Strand 2	D	295	299	anti-parallel
Strand 3	D	312	315	anti-parallel
Strand 4	D	320	323	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	38	46	first strand
Strand 2	E	49	57	anti-parallel
Strand 3	E	2	9	parallel
Strand 4	E	77	83	parallel
Strand 5	E	111	116	parallel
Strand 6	E	141	143	parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	57	first strand
Strand 2	F	416	420	anti-parallel
Strand 3	F	399	403	anti-parallel
Strand 4	F	392	396	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	76	first strand
Strand 2	F	79	86	anti-parallel
Strand 3	F	91	99	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	122	126	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	F	129	139	anti-parallel
Strand 3	F	144	156	anti-parallel
Strand 4	F	161	164	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	183	first strand
Strand 2	F	186	193	anti-parallel
Strand 3	F	198	206	anti-parallel
Strand 4	F	216	217	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	221	222	first strand
Strand 2	F	264	267	parallel
Strand 3	F	255	259	anti-parallel
Strand 4	F	239	243	anti-parallel
Strand 5	F	233	236	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	288	291	first strand
Strand 2	F	295	299	anti-parallel
Strand 3	F	312	315	anti-parallel
Strand 4	F	320	323	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	53	57	first strand
Strand 2	H	416	420	anti-parallel
Strand 3	H	399	403	anti-parallel
Strand 4	H	392	396	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	76	first strand
Strand 2	H	79	86	anti-parallel
Strand 3	H	91	99	anti-parallel

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There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	105	106	first strand
Strand 2	I	38	45	anti-parallel
Strand 3	I	50	57	anti-parallel
Strand 4	I	1	10	parallel
Strand 5	I	77	83	parallel
Strand 6	I	111	116	parallel
Strand 7	I	141	143	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	119	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	122	126	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	118	119	first strand
Strand 2	H	129	139	anti-parallel
Strand 3	H	144	156	anti-parallel
Strand 4	H	161	164	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	179	183	first strand
Strand 2	H	186	193	anti-parallel
Strand 3	H	198	206	anti-parallel
Strand 4	H	215	217	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	221	222	first strand
Strand 2	H	264	267	parallel
Strand 3	H	255	259	anti-parallel
Strand 4	H	239	243	anti-parallel
Strand 5	H	233	236	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	288	291	first strand
Strand 2	H	295	299	anti-parallel
Strand 3	H	312	315	anti-parallel
Strand 4	H	320	323	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	53	57	first strand
Strand 2	J	412	420	anti-parallel
Strand 3	J	399	406	anti-parallel
Strand 4	J	392	396	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	72	76	first strand
Strand 2	J	79	86	anti-parallel
Strand 3	J	91	99	anti-parallel
Strand 4	J	104	107	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	119	first strand
Strand 2	J	129	139	anti-parallel
Strand 3	J	122	126	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	118	119	first strand
Strand 2	J	129	139	anti-parallel
Strand 3	J	144	156	anti-parallel
Strand 4	J	161	164	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	179	183	first strand
Strand 2	J	186	193	anti-parallel
Strand 3	J	198	206	anti-parallel
Strand 4	J	215	217	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	221	222	first strand
Strand 2	J	264	268	parallel
Strand 3	J	255	259	anti-parallel
Strand 4	J	239	243	anti-parallel
Strand 5	J	233	236	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	288	291	first strand
Strand 2	J	295	299	anti-parallel
Strand 3	J	312	315	anti-parallel
Strand 4	J	320	323	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MF0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MF0