Analysis of interatomic Contacts of Structural Units in PDB entry:
9MF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MF4 entry

There are 2 chains in PDB entry 9MF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 1894
B
 ALA 1LEU 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9MF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
21 37Right-handed alpha
Helix 3
AA3
A
41 63Right-handed alpha
Helix 4
AA4
A
68 90Right-handed alpha
Helix 5
AA5
A
108 121Right-handed alpha
Helix 6
AA6
A
137 158Right-handed alpha
Helix 7
AA7
A
167 197Right-handed alpha
Helix 8
AA8
A
201 214Right-handed alpha
Helix 9
AA9
A
217 235Right-handed alpha
Helix 10
AB1
A
243 248Right-handed alpha
Helix 11
AB2
A
250 261Right-handed alpha
Helix 12
AB3
A
264 280Right-handed alpha
Helix 13
AB4
A
308 324Right-handed alpha
Helix 14
AB5
A
339 353Right-handed alpha
Helix 15
AB6
A
355 359Right-handed 310
Helix 16
AB7
A
393 419Right-handed alpha
Helix 17
AB8
A
423 439Right-handed alpha
Helix 18
AB9
A
443 450Right-handed alpha
Helix 19
AC1
A
451 456Right-handed 310
Helix 20
AC2
A
463 469Right-handed alpha
Helix 21
AC3
A
470 484Right-handed alpha
Helix 22
AC4
A
494 499Right-handed alpha
Helix 23
AC5
A
500 502Right-handed 310
Helix 24
AC6
A
512 519Right-handed alpha
Helix 25
AC7
A
523 539Right-handed alpha
Helix 26
AC8
A
545 549Right-handed 310
Helix 27
AC9
A
558 569Right-handed alpha
Helix 28
AD1
A
587 601Right-handed alpha
Helix 29
AD2
A
667 683Right-handed alpha
Helix 30
AD3
A
706 709Right-handed 310
Helix 31
AD4
A
710 727Right-handed alpha
Helix 32
AD5
A
731 733Right-handed 310
Helix 33
AD6
A
764 775Right-handed alpha
Helix 34
AD7
A
793 809Right-handed alpha
Helix 35
AD8
A
814 837Right-handed alpha
Helix 36
AD9
A
1650 1652Right-handed 310
Helix 37
AE1
A
1679 1682Right-handed 310
Helix 38
AE2
A
1736 1738Right-handed 310
Helix 39
AE3
A
1773 1779Right-handed alpha
Helix 40
AE4
A
1792 1799Right-handed alpha
Helix 41
AE5
A
1867 1871Right-handed 310
Helix 42
AE6
B
2 19Right-handed alpha
Helix 43
AE7
B
20 37Right-handed alpha
Helix 44
AE8
B
39 57Right-handed alpha
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There are 12 sheets in PDB entry 9MF4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
367 368anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 239first strand
Strand 2
A
126 131parallel
Strand 3
A
97 101parallel
Strand 4
A
282 285parallel
Strand 5
A
381 389anti-parallel
Strand 6
A
374 378anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
290 291first strand
Strand 2
A
508 509anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 632first strand
Strand 2
A
617 622anti-parallel
Strand 3
A
605 608anti-parallel
Strand 4
A
578 583parallel
Strand 5
A
645 652parallel
Strand 6
A
690 697parallel
Strand 7
A
735 740parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
744 746first strand
Strand 2
A
752 756anti-parallel
Strand 3
A
760 762anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
777 781first strand
Strand 2
A
786 790anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1635 1640first strand
Strand 2
A
1643 1648anti-parallel
Strand 3
A
1655 1659anti-parallel
Strand 4
A
1690 1693parallel
Strand 5
A
1716 1719parallel
Strand 6
A
1764 1767parallel
Strand 7
A
1748 1753anti-parallel
Strand 8
A
1740 1745anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1673 1677first strand
Strand 2
A
1701 1705parallel
Strand 3
A
1729 1732parallel
Strand 4
A
1780 1783parallel
Strand 5
A
1790 1791anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1814 1818first strand
Strand 2
A
1821 1825anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1834 1838first strand
Strand 2
A
1841 1845anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1855 1859first strand
Strand 2
A
1862 1866anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1877 1881first strand
Strand 2
A
1884 1888anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il