Analysis of interatomic Contacts of Structural Units in PDB entry:
9MF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MF5 entry

There are 3 chains in PDB entry 9MF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 25ALA 601
B
 GLN 38LYS 403
C
 GLU 3LEU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 9MF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 32Right-handed alpha
Helix 2
AA2
A
36 46Right-handed alpha
Helix 3
AA3
A
46 55Right-handed alpha
Helix 4
AA4
A
55 62Right-handed alpha
Helix 5
AA5
A
62 70Right-handed alpha
Helix 6
AA6
A
74 85Right-handed alpha
Helix 7
AA7
A
87 92Right-handed alpha
Helix 8
AA8
A
94 100Right-handed 310
Helix 9
AA9
A
101 111Right-handed alpha
Helix 10
AB1
A
113 131Right-handed alpha
Helix 11
AB2
A
132 139Right-handed alpha
Helix 12
AB3
A
139 149Right-handed alpha
Helix 13
AB4
A
152 160Right-handed alpha
Helix 14
AB5
A
162 167Right-handed alpha
Helix 15
AB6
A
171 187Right-handed alpha
Helix 16
AB7
A
190 208Right-handed alpha
Helix 17
AB8
A
209 216Right-handed alpha
Helix 18
AB9
A
216 226Right-handed alpha
Helix 19
AC1
A
229 247Right-handed alpha
Helix 20
AC2
A
248 256Right-handed alpha
Helix 21
AC3
A
256 265Right-handed alpha
Helix 22
AC4
A
268 278Right-handed alpha
Helix 23
AC5
A
278 295Right-handed alpha
Helix 24
AC6
A
295 304Right-handed alpha
Helix 25
AC7
A
307 324Right-handed alpha
Helix 26
AC8
A
326 338Right-handed alpha
Helix 27
AC9
A
338 347Right-handed alpha
Helix 28
AD1
A
350 361Right-handed alpha
Helix 29
AD2
A
362 369Right-handed alpha
Helix 30
AD3
A
369 386Right-handed alpha
Helix 31
AD4
A
389 399Right-handed alpha
Helix 32
AD5
A
399 424Right-handed alpha
Helix 33
AD6
A
428 447Right-handed alpha
Helix 34
AD7
A
447 455Right-handed alpha
Helix 35
AD8
A
455 462Right-handed alpha
Helix 36
AD9
A
463 465Right-handed 310
Helix 37
AE1
A
467 502Right-handed alpha
Helix 38
AE2
A
506 542Right-handed alpha
Helix 39
AE3
A
545 559Right-handed alpha
Helix 40
AE4
A
564 581Right-handed alpha
Helix 41
AE5
A
584 598Right-handed alpha
Helix 42
AE6
B
39 50Right-handed alpha
Helix 43
AE7
B
62 83Right-handed alpha
Helix 44
AE8
B
90 104Right-handed alpha
Helix 45
AE9
B
119 123Right-handed 310
Helix 46
AF1
B
130 147Right-handed alpha
Helix 47
AF2
B
151 159Right-handed alpha
Helix 48
AF3
B
160 170Right-handed alpha
Helix 49
AF4
B
171 173Right-handed 310
Helix 50
AF5
B
175 193Right-handed alpha
Helix 51
AF6
B
196 214Right-handed alpha
Helix 52
AF7
B
220 234Right-handed alpha
Helix 53
AF8
B
240 250Right-handed alpha
Helix 54
AF9
B
250 255Right-handed alpha
Helix 55
AG1
B
256 258Right-handed 310
Helix 56
AG2
B
259 278Right-handed alpha
Helix 57
AG3
B
281 292Right-handed alpha
Helix 58
AG4
B
297 313Right-handed alpha
Helix 59
AG5
B
316 336Right-handed alpha
Helix 60
AG6
B
339 348Right-handed alpha
Helix 61
AG7
B
349 351Right-handed 310
Helix 62
AG8
B
352 361Right-handed alpha
Helix 63
AG9
B
362 378Right-handed alpha
Helix 64
AH1
B
383 401Right-handed alpha
Helix 65
AH2
C
4 18Right-handed alpha
Helix 66
AH3
C
24 40Right-handed alpha
Helix 67
AH4
C
61 73Right-handed alpha
Helix 68
AH5
C
92 107Right-handed alpha
Helix 69
AH6
C
120 127Right-handed alpha
Helix 70
AH7
C
127 138Right-handed alpha
Helix 71
AH8
C
140 151Right-handed alpha
Helix 72
AH9
C
176 183Right-handed alpha
Helix 73
AI1
C
193 201Right-handed alpha
Helix 74
AI2
C
221 233Right-handed alpha
Helix 75
AI3
C
264 268Right-handed 310
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There are 3 sheets in PDB entry 9MF5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
45 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 166anti-parallel
Strand 4
C
236 239parallel
Strand 5
C
256 259parallel
Strand 6
C
248 251anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 113first strand
Strand 2
C
80 82parallel
Strand 3
C
52 55parallel
Strand 4
C
273 278anti-parallel
Strand 5
C
284 289anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
202 203first strand
Strand 2
C
218 220parallel
Strand 3
C
210 211anti-parallel
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