Analysis of interatomic Contacts of Structural Units in PDB entry:
9MFY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MFY entry

There are 2 chains in PDB entry 9MFY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	VAL 139	ARG 494
A	LEU 1241	MET 4092

There are121 helices in PDB entry 9MFY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	364	369	Right-handed alpha
Helix 2	AA2	A	1242	1250	Right-handed alpha
Helix 3	AA3	A	1252	1256	Right-handed 310
Helix 4	AA4	A	1257	1274	Right-handed alpha
Helix 5	AA5	A	1276	1281	Right-handed alpha
Helix 6	AA6	A	1282	1298	Right-handed alpha
Helix 7	AA7	A	1298	1306	Right-handed alpha
Helix 8	AA8	A	1311	1322	Right-handed alpha
Helix 9	AA9	A	1328	1334	Right-handed alpha
Helix 10	AB1	A	1338	1345	Right-handed alpha
Helix 11	AB2	A	1350	1379	Right-handed alpha
Helix 12	AB3	A	1398	1416	Right-handed alpha
Helix 13	AB4	A	1417	1422	Right-handed 310
Helix 14	AB5	A	1424	1459	Right-handed alpha
Helix 15	AB6	A	1462	1469	Right-handed alpha
Helix 16	AB7	A	1469	1492	Right-handed alpha
Helix 17	AB8	A	1497	1502	Right-handed 310
Helix 18	AB9	A	1504	1534	Right-handed alpha
Helix 19	AC1	A	1535	1540	Right-handed 310
Helix 20	AC2	A	1541	1551	Right-handed alpha
Helix 21	AC3	A	1556	1560	Right-handed 310
Helix 22	AC4	A	1561	1566	Right-handed alpha
Helix 23	AC5	A	1603	1631	Right-handed alpha
Helix 24	AC6	A	1635	1641	Right-handed alpha
Helix 25	AC7	A	1644	1667	Right-handed alpha
Helix 26	AC8	A	1668	1689	Right-handed alpha
Helix 27	AC9	A	1691	1718	Right-handed alpha
Helix 28	AD1	A	1720	1731	Right-handed alpha
Helix 29	AD2	A	1772	1788	Right-handed alpha
Helix 30	AD3	A	1801	1813	Right-handed alpha
Helix 31	AD4	A	1827	1842	Right-handed alpha
Helix 32	AD5	A	1854	1875	Right-handed alpha
Helix 33	AD6	A	1911	1914	Right-handed 310
Helix 34	AD7	A	1925	1938	Right-handed alpha
Helix 35	AD8	A	1941	1960	Right-handed alpha
Helix 36	AD9	A	1969	1987	Right-handed alpha
Helix 37	AE1	A	1990	2002	Right-handed alpha
Helix 38	AE2	A	2003	2006	Right-handed 310
Helix 39	AE3	A	2007	2022	Right-handed alpha
Helix 40	AE4	A	2032	2046	Right-handed alpha
Helix 41	AE5	A	2050	2067	Right-handed alpha
Helix 42	AE6	A	2079	2096	Right-handed alpha
Helix 43	AE7	A	2110	2115	Right-handed alpha
Helix 44	AE8	A	2129	2139	Right-handed alpha
Helix 45	AE9	A	2144	2146	Right-handed 310
Helix 46	AF1	A	2159	2165	Right-handed alpha
Helix 47	AF2	A	2166	2171	Right-handed alpha
Helix 48	AF3	A	2203	2210	Right-handed alpha
Helix 49	AF4	A	2223	2238	Right-handed alpha
Helix 50	AF5	A	2242	2257	Right-handed alpha
Helix 51	AF6	A	2258	2271	Right-handed alpha
Helix 52	AF7	A	2279	2297	Right-handed alpha
Helix 53	AF8	A	2306	2327	Right-handed alpha
Helix 54	AF9	A	2331	2346	Right-handed alpha
Helix 55	AG1	A	2381	2385	Right-handed 310
Helix 56	AG2	A	2394	2410	Right-handed alpha
Helix 57	AG3	A	2423	2434	Right-handed alpha
Helix 58	AG4	A	2450	2462	Right-handed alpha
Helix 59	AG5	A	2500	2512	Right-handed alpha
Helix 60	AG6	A	2547	2552	Right-handed alpha
Helix 61	AG7	A	2565	2580	Right-handed alpha
Helix 62	AG8	A	2582	2587	Right-handed 310
Helix 63	AG9	A	2588	2607	Right-handed alpha
Helix 64	AH1	A	2618	2635	Right-handed alpha
Helix 65	AH2	A	2640	2656	Right-handed alpha
Helix 66	AH3	A	2663	2681	Right-handed alpha
Helix 67	AH4	A	2690	2694	Right-handed 310
Helix 68	AH5	A	2708	2727	Right-handed alpha
Helix 69	AH6	A	2735	2750	Right-handed alpha
Helix 70	AH7	A	2765	2778	Right-handed alpha
Helix 71	AH8	A	2791	2809	Right-handed alpha
Helix 72	AH9	A	2824	2837	Right-handed alpha
Helix 73	AI1	A	2846	2863	Right-handed alpha
Helix 74	AI2	A	2869	2885	Right-handed alpha
Helix 75	AI3	A	2896	2905	Right-handed alpha
Helix 76	AI4	A	2905	2911	Right-handed alpha
Helix 77	AI5	A	2921	2933	Right-handed alpha
Helix 78	AI6	A	2935	2939	Right-handed 310
Helix 79	AI7	A	2949	2953	Right-handed 310
Helix 80	AI8	A	2960	2981	Right-handed alpha
Helix 81	AI9	A	2990	3027	Right-handed alpha
Helix 82	AJ1	A	3298	3308	Right-handed alpha
Helix 83	AJ2	A	3310	3317	Right-handed alpha
Helix 84	AJ3	A	3319	3333	Right-handed alpha
Helix 85	AJ4	A	3334	3337	Right-handed 310
Helix 86	AJ5	A	3338	3357	Right-handed alpha
Helix 87	AJ6	A	3365	3371	Right-handed alpha
Helix 88	AJ7	A	3372	3382	Right-handed alpha
Helix 89	AJ8	A	3387	3399	Right-handed alpha
Helix 90	AJ9	A	3412	3423	Right-handed alpha
Helix 91	AK1	A	3424	3426	Right-handed 310
Helix 92	AK2	A	3435	3446	Right-handed alpha
Helix 93	AK3	A	3462	3467	Right-handed alpha
Helix 94	AK4	A	3506	3513	Right-handed alpha
Helix 95	AK5	A	3525	3538	Right-handed alpha
Helix 96	AK6	A	3538	3572	Right-handed alpha
Helix 97	AK7	A	3576	3581	Right-handed alpha
Helix 98	AK8	A	3581	3639	Right-handed alpha
Helix 99	AK9	A	3640	3643	Right-handed 310
Helix 100	AL1	A	3645	3659	Right-handed alpha
Helix 101	AL2	A	3669	3687	Right-handed alpha
Helix 102	AL3	A	3691	3711	Right-handed alpha
Helix 103	AL4	A	3712	3727	Right-handed alpha
Helix 104	AL5	A	3741	3753	Right-handed alpha
Helix 105	AL6	A	3755	3767	Right-handed alpha
Helix 106	AL7	A	3773	3781	Right-handed alpha
Helix 107	AL8	A	3796	3807	Right-handed alpha
Helix 108	AL9	A	3818	3836	Right-handed alpha
Helix 109	AM1	A	3844	3846	Right-handed 310
Helix 110	AM2	A	3847	3854	Right-handed alpha
Helix 111	AM3	A	3854	3862	Right-handed alpha
Helix 112	AM4	A	3885	3892	Right-handed alpha
Helix 113	AM5	A	3902	3915	Right-handed alpha
Helix 114	AM6	A	3916	3918	Right-handed 310
Helix 115	AM7	A	3922	3943	Right-handed alpha
Helix 116	AM8	A	3957	3975	Right-handed alpha
Helix 117	AM9	A	3981	3992	Right-handed alpha
Helix 118	AN1	A	4000	4016	Right-handed alpha
Helix 119	AN2	A	4037	4051	Right-handed alpha
Helix 120	AN3	A	4057	4062	Right-handed alpha
Helix 121	AN4	A	4066	4092	Right-handed alpha

There are 23 sheets in PDB entry 9MFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	153	first strand
Strand 2	B	488	491	anti-parallel
Strand 3	B	480	483	anti-parallel
Strand 4	B	465	466	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	163	first strand
Strand 2	B	169	174	anti-parallel
Strand 3	B	178	183	anti-parallel
Strand 4	B	192	195	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	208	first strand
Strand 2	B	220	225	anti-parallel
Strand 3	B	231	237	anti-parallel
Strand 4	B	242	249	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	256	263	first strand
Strand 2	B	268	274	anti-parallel
Strand 3	B	279	283	anti-parallel
Strand 4	B	291	293	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	306	first strand
Strand 2	B	309	311	anti-parallel
Strand 3	B	318	323	anti-parallel
Strand 4	B	328	334	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	346	first strand
Strand 2	B	372	377	anti-parallel
Strand 3	B	381	386	anti-parallel
Strand 4	B	408	414	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	391	393	first strand
Strand 2	B	396	399	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	426	first strand
Strand 2	B	429	434	anti-parallel
Strand 3	B	439	443	anti-parallel
Strand 4	B	449	452	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1384	1387	first strand
Strand 2	A	1393	1396	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1569	1575	first strand
Strand 2	A	1578	1584	anti-parallel
Strand 3	A	1589	1597	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1733	1736	first strand
Strand 2	A	1747	1751	anti-parallel
Strand 3	A	1754	1757	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1818	1819	first strand
Strand 2	A	1844	1847	parallel
Strand 3	A	1893	1898	parallel
Strand 4	A	1791	1795	parallel
Strand 5	A	1916	1917	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1878	1881	first strand
Strand 2	A	1884	1887	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2098	2104	first strand
Strand 2	A	2148	2154	parallel
Strand 3	A	2190	2194	parallel
Strand 4	A	2069	2073	parallel
Strand 5	A	2211	2214	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2175	2177	first strand
Strand 2	A	2183	2185	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2438	2440	first strand
Strand 2	A	2481	2487	parallel
Strand 3	A	2443	2444	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2438	2440	first strand
Strand 2	A	2481	2487	parallel
Strand 3	A	2529	2535	parallel
Strand 4	A	2413	2417	parallel
Strand 5	A	2554	2558	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2465	2466	first strand
Strand 2	A	2472	2474	anti-parallel
Strand 3	A	2523	2526	parallel
Strand 4	A	2515	2516	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2696	2697	first strand
Strand 2	A	2705	2706	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2780	2782	first strand
Strand 2	A	2813	2818	parallel
Strand 3	A	2886	2891	parallel
Strand 4	A	2755	2760	parallel
Strand 5	A	2912	2918	parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3427	3429	first strand
Strand 2	A	3450	3452	parallel
Strand 3	A	3494	3498	parallel
Strand 4	A	3405	3408	parallel
Strand 5	A	3514	3517	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3471	3472	first strand
Strand 2	A	3477	3481	anti-parallel
Strand 3	A	3484	3487	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3811	3815	first strand
Strand 2	A	3838	3842	parallel
Strand 3	A	3873	3876	parallel
Strand 4	A	3785	3790	parallel
Strand 5	A	3893	3897	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MFY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MFY