Analysis of interatomic Contacts of Structural Units in PDB entry:
9MGE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MGE entry

There are 7 chains in PDB entry 9MGE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	LYS 808
B	PHE 23	ARG 392
C	SER 29	LEU 89
D	VAL 27	SER 243
E	GLU 24	GLY 112
F	ALA 710	TRP 810
G	UNK 1	UNK 6

There are 31 helices in PDB entry 9MGE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	70	Right-handed alpha
Helix 3	AA3	A	106	118	Right-handed alpha
Helix 4	AA4	A	126	145	Right-handed alpha
Helix 5	AA5	A	189	196	Right-handed alpha
Helix 6	AA6	A	215	233	Right-handed alpha
Helix 7	AA7	A	280	289	Right-handed alpha
Helix 8	AA8	A	297	315	Right-handed alpha
Helix 9	AA9	A	361	367	Right-handed alpha
Helix 10	AB1	A	378	391	Right-handed alpha
Helix 11	AB2	A	449	452	Right-handed 310
Helix 12	AB3	A	542	552	Right-handed alpha
Helix 13	AB4	A	647	651	Right-handed 310
Helix 14	AB5	A	729	731	Right-handed 310
Helix 15	AB6	B	211	213	Right-handed 310
Helix 16	AB7	C	31	36	Right-handed alpha
Helix 17	AB8	C	76	80	Right-handed 310
Helix 18	AB9	D	34	46	Right-handed alpha
Helix 19	AC1	D	47	62	Right-handed alpha
Helix 20	AC2	D	68	82	Right-handed alpha
Helix 21	AC3	D	84	99	Right-handed alpha
Helix 22	AC4	D	104	121	Right-handed alpha
Helix 23	AC5	D	131	135	Right-handed 310
Helix 24	AC6	D	137	154	Right-handed alpha
Helix 25	AC7	D	159	189	Right-handed alpha
Helix 26	AC8	D	190	205	Right-handed alpha
Helix 27	AC9	D	208	225	Right-handed alpha
Helix 28	AD1	D	227	242	Right-handed alpha
Helix 29	AD2	E	39	44	Right-handed alpha
Helix 30	AD3	E	51	60	Right-handed alpha
Helix 31	AD4	F	726	731	Right-handed alpha

There are 17 sheets in PDB entry 9MGE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	83	88	parallel
Strand 3	A	75	79	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	99	first strand
Strand 2	A	162	170	parallel
Strand 3	A	150	158	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	274	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	328	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	411	420	parallel
Strand 4	A	395	404	anti-parallel

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There are 22 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	806	first strand
Strand 2	A	783	792	anti-parallel
Strand 3	A	767	776	anti-parallel
Strand 4	A	733	745	anti-parallel
Strand 5	A	710	719	anti-parallel
Strand 6	A	628	640	anti-parallel
Strand 7	A	608	620	anti-parallel
Strand 8	A	590	600	anti-parallel
Strand 9	A	564	579	anti-parallel
Strand 10	A	523	537	anti-parallel
Strand 11	A	505	518	anti-parallel
Strand 12	A	483	494	anti-parallel
Strand 13	A	467	479	anti-parallel
Strand 14	A	455	462	anti-parallel
Strand 15	A	439	447	anti-parallel
Strand 16	A	425	432	anti-parallel
Strand 17	F	802	808	anti-parallel
Strand 18	F	781	790	anti-parallel
Strand 19	F	767	778	anti-parallel
Strand 20	F	733	743	anti-parallel
Strand 21	F	711	719	anti-parallel
Strand 22	G	2	6	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	662	663	first strand
Strand 2	A	799	800	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	674	first strand
Strand 2	A	700	705	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	379	381	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	81	85	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	124	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	253	254	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	308	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	346	350	anti-parallel
Strand 4	B	356	359	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	96	anti-parallel
Strand 4	E	100	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MGE

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MGE