Analysis of interatomic Contacts of Structural Units in PDB entry:
9MGF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MGF entry

There are 7 chains in PDB entry 9MGF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	LYS 808
B	LEU 22	ARG 392
C	SER 29	PRO 88
D	LYS 24	SER 243
E	GLU 24	GLY 112
F	LYS 610	TRP 810
G	UNK 1	UNK 8

There are 32 helices in PDB entry 9MGF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	70	Right-handed alpha
Helix 3	AA3	A	106	118	Right-handed alpha
Helix 4	AA4	A	126	144	Right-handed alpha
Helix 5	AA5	A	189	197	Right-handed alpha
Helix 6	AA6	A	204	208	Right-handed 310
Helix 7	AA7	A	215	234	Right-handed alpha
Helix 8	AA8	A	280	286	Right-handed alpha
Helix 9	AA9	A	297	315	Right-handed alpha
Helix 10	AB1	A	361	367	Right-handed alpha
Helix 11	AB2	A	378	393	Right-handed alpha
Helix 12	AB3	A	450	452	Right-handed 310
Helix 13	AB4	A	542	553	Right-handed alpha
Helix 14	AB5	A	647	651	Right-handed 310
Helix 15	AB6	A	679	683	Right-handed 310
Helix 16	AB7	B	240	244	Right-handed 310
Helix 17	AB8	C	29	37	Right-handed 310
Helix 18	AB9	C	39	44	Right-handed 310
Helix 19	AC1	C	76	80	Right-handed 310
Helix 20	AC2	D	31	46	Right-handed alpha
Helix 21	AC3	D	47	62	Right-handed alpha
Helix 22	AC4	D	67	82	Right-handed alpha
Helix 23	AC5	D	84	99	Right-handed alpha
Helix 24	AC6	D	104	121	Right-handed alpha
Helix 25	AC7	D	137	154	Right-handed alpha
Helix 26	AC8	D	159	189	Right-handed alpha
Helix 27	AC9	D	190	205	Right-handed alpha
Helix 28	AD1	D	210	225	Right-handed alpha
Helix 29	AD2	D	227	242	Right-handed alpha
Helix 30	AD3	E	39	44	Right-handed alpha
Helix 31	AD4	E	51	60	Right-handed alpha
Helix 32	AD5	F	726	731	Right-handed alpha

There are 16 sheets in PDB entry 9MGF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	83	88	parallel
Strand 3	A	75	78	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	99	first strand
Strand 2	A	162	170	parallel
Strand 3	A	150	158	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	183	first strand
Strand 2	A	253	261	parallel
Strand 3	A	239	247	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	334	342	parallel
Strand 3	A	267	268	parallel
Strand 4	A	294	295	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	272	274	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	329	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	348	355	anti-parallel
Strand 3	A	411	420	parallel
Strand 4	A	395	404	anti-parallel

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There are 23 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	806	first strand
Strand 2	A	781	792	anti-parallel
Strand 3	A	767	778	anti-parallel
Strand 4	A	733	745	anti-parallel
Strand 5	A	710	719	anti-parallel
Strand 6	A	628	640	anti-parallel
Strand 7	A	608	620	anti-parallel
Strand 8	A	590	600	anti-parallel
Strand 9	A	564	580	anti-parallel
Strand 10	A	523	537	anti-parallel
Strand 11	A	505	518	anti-parallel
Strand 12	A	483	494	anti-parallel
Strand 13	A	466	479	anti-parallel
Strand 14	A	454	462	anti-parallel
Strand 15	A	439	449	anti-parallel
Strand 16	A	425	434	anti-parallel
Strand 17	F	799	809	anti-parallel
Strand 18	F	782	788	anti-parallel
Strand 19	F	766	777	anti-parallel
Strand 20	F	734	745	anti-parallel
Strand 21	F	710	720	anti-parallel
Strand 22	F	628	637	anti-parallel
Strand 23	F	611	620	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	379	381	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	81	85	anti-parallel
Strand 4	B	91	95	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	111	118	first strand
Strand 2	B	121	126	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	292	first strand
Strand 2	B	295	299	anti-parallel
Strand 3	B	305	309	anti-parallel
Strand 4	B	315	319	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	331	333	first strand
Strand 2	B	336	340	anti-parallel
Strand 3	B	346	350	anti-parallel
Strand 4	B	356	359	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	35	first strand
Strand 2	E	73	80	anti-parallel
Strand 3	E	87	96	anti-parallel
Strand 4	E	100	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MGF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MGF