Analysis of interatomic Contacts of Structural Units in PDB entry:
9MGG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MGG entry

There are 6 chains in PDB entry 9MGG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 24	GLY 807
C	ASP 38	PRO 88
D	GLU 26	SER 243
E	ARG 25	GLY 112
B	VAL 30	ARG 392
F	THR 467	LYS 808

There are 32 helices in PDB entry 9MGG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	46	Right-handed alpha
Helix 2	AA2	A	55	70	Right-handed alpha
Helix 3	AA3	A	106	118	Right-handed alpha
Helix 4	AA4	A	126	144	Right-handed alpha
Helix 5	AA5	A	189	197	Right-handed alpha
Helix 6	AA6	A	215	234	Right-handed alpha
Helix 7	AA7	A	280	289	Right-handed alpha
Helix 8	AA8	A	297	316	Right-handed alpha
Helix 9	AA9	A	330	332	Right-handed 310
Helix 10	AB1	A	361	369	Right-handed alpha
Helix 11	AB2	A	378	393	Right-handed alpha
Helix 12	AB3	A	542	552	Right-handed alpha
Helix 13	AB4	A	647	651	Right-handed 310
Helix 14	AB5	A	750	754	Right-handed 310
Helix 15	AB6	C	76	80	Right-handed 310
Helix 16	AB7	D	34	45	Right-handed alpha
Helix 17	AB8	D	47	62	Right-handed alpha
Helix 18	AB9	D	68	82	Right-handed alpha
Helix 19	AC1	D	84	99	Right-handed alpha
Helix 20	AC2	D	104	121	Right-handed alpha
Helix 21	AC3	D	122	128	Right-handed 310
Helix 22	AC4	D	137	154	Right-handed alpha
Helix 23	AC5	D	159	189	Right-handed alpha
Helix 24	AC6	D	190	205	Right-handed alpha
Helix 25	AC7	D	208	224	Right-handed alpha
Helix 26	AC8	D	227	240	Right-handed alpha
Helix 27	AC9	E	42	46	Right-handed 310
Helix 28	AD1	E	51	60	Right-handed alpha
Helix 29	AD2	B	240	244	Right-handed 310
Helix 30	AD3	F	497	499	Right-handed 310
Helix 31	AD4	F	542	553	Right-handed alpha
Helix 32	AD5	F	726	731	Right-handed alpha

There are 18 sheets in PDB entry 9MGG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	83	88	parallel
Strand 3	A	75	79	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	123	124	first strand
Strand 2	A	94	99	anti-parallel
Strand 3	A	162	170	parallel
Strand 4	A	150	158	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	253	257	parallel
Strand 3	A	244	247	anti-parallel
Strand 4	B	192	193	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	274	first strand
Strand 2	A	334	342	parallel
Strand 3	A	321	328	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	348	355	first strand
Strand 2	A	411	420	parallel
Strand 3	A	395	404	anti-parallel

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There are 29 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	806	first strand
Strand 2	A	783	792	anti-parallel
Strand 3	A	767	776	anti-parallel
Strand 4	A	735	745	anti-parallel
Strand 5	A	710	720	anti-parallel
Strand 6	A	624	640	anti-parallel
Strand 7	A	608	621	anti-parallel
Strand 8	A	591	599	anti-parallel
Strand 9	A	564	578	anti-parallel
Strand 10	A	523	537	anti-parallel
Strand 11	A	506	515	anti-parallel
Strand 12	A	485	494	anti-parallel
Strand 13	A	466	474	anti-parallel
Strand 14	A	455	462	anti-parallel
Strand 15	A	439	447	anti-parallel
Strand 16	A	426	432	anti-parallel
Strand 17	F	802	806	anti-parallel
Strand 18	F	782	792	anti-parallel
Strand 19	F	767	777	anti-parallel
Strand 20	F	734	742	anti-parallel
Strand 21	F	710	720	anti-parallel
Strand 22	F	628	637	anti-parallel
Strand 23	F	609	620	anti-parallel
Strand 24	F	590	600	anti-parallel
Strand 25	F	564	577	anti-parallel
Strand 26	F	524	537	anti-parallel
Strand 27	F	505	517	anti-parallel
Strand 28	F	483	495	anti-parallel
Strand 29	F	468	479	anti-parallel

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There are 22 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	802	806	first strand
Strand 2	A	783	792	anti-parallel
Strand 3	A	767	776	anti-parallel
Strand 4	A	735	745	anti-parallel
Strand 5	A	710	720	anti-parallel
Strand 6	A	624	640	anti-parallel
Strand 7	A	608	621	anti-parallel
Strand 8	A	591	599	anti-parallel
Strand 9	A	564	578	anti-parallel
Strand 10	A	523	537	anti-parallel
Strand 11	A	506	515	anti-parallel
Strand 12	A	485	494	anti-parallel
Strand 13	A	466	474	anti-parallel
Strand 14	A	455	462	anti-parallel
Strand 15	A	439	447	anti-parallel
Strand 16	A	426	432	anti-parallel
Strand 17	F	802	806	anti-parallel
Strand 18	F	782	792	anti-parallel
Strand 19	F	767	777	anti-parallel
Strand 20	F	734	742	anti-parallel
Strand 21	F	710	720	anti-parallel
Strand 22	F	744	745	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	671	673	first strand
Strand 2	A	701	705	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	72	80	anti-parallel
Strand 3	E	87	96	anti-parallel
Strand 4	E	100	107	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	45	51	first strand
Strand 2	B	386	391	anti-parallel
Strand 3	B	377	381	anti-parallel
Strand 4	B	372	374	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	68	first strand
Strand 2	B	71	75	anti-parallel
Strand 3	B	81	85	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	118	first strand
Strand 2	B	121	124	anti-parallel
Strand 3	B	130	135	anti-parallel
Strand 4	B	141	146	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	161	165	anti-parallel
Strand 3	B	170	175	anti-parallel
Strand 4	B	181	186	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	B	206	209	anti-parallel
Strand 3	B	215	220	anti-parallel
Strand 4	B	226	231	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	254	first strand
Strand 2	B	257	260	anti-parallel
Strand 3	B	267	271	anti-parallel
Strand 4	B	277	281	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	287	292	first strand
Strand 2	B	295	300	anti-parallel
Strand 3	B	304	308	anti-parallel
Strand 4	B	315	318	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	337	340	first strand
Strand 2	B	346	349	anti-parallel
Strand 3	B	356	358	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	671	673	first strand
Strand 2	F	701	705	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MGG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MGG