Analysis of interatomic Contacts of Structural Units in PDB entry:
9MGZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MGZ entry

There are 18 chains in PDB entry 9MGZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
1	GLN 32	VAL 228
3	LEU 58	LYS 283
7	ALA 39	PHE 255
8	ASN 28	SER 253
A	LYS 12	GLY 751
B	ALA 2	GLY 735
C	ALA 2	TYR 81
D	PRO 51	ILE 193
E	LYS 43	PRO 109
F	ASP 63	ARG 227
J	MET 1	PHE 41
K	GLY 41	LEU 123
T	THR 130	PRO 339
a	GLN 32	VAL 228
b	ASN 28	ALA 251
c	ASP 42	PRO 250
L	MET 56	VAL 193
I	PHE 15	LYS 49

There are152 helices in PDB entry 9MGZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	1	64	95	Right-handed alpha
Helix 2	AA2	1	103	108	Right-handed 310
Helix 3	AA3	1	123	144	Right-handed alpha
Helix 4	AA4	1	147	153	Right-handed alpha
Helix 5	AA5	1	155	159	Right-handed 310
Helix 6	AA6	1	166	198	Right-handed alpha
Helix 7	AA7	1	201	212	Right-handed alpha
Helix 8	AA8	1	217	221	Right-handed 310
Helix 9	AA9	3	101	132	Right-handed alpha
Helix 10	AB1	3	136	140	Right-handed 310
Helix 11	AB2	3	161	186	Right-handed alpha
Helix 12	AB3	3	188	192	Right-handed 310
Helix 13	AB4	3	198	203	Right-handed 310
Helix 14	AB5	3	212	217	Right-handed alpha
Helix 15	AB6	3	224	256	Right-handed alpha
Helix 16	AB7	3	259	270	Right-handed alpha
Helix 17	AB8	3	275	280	Right-handed alpha
Helix 18	AB9	7	74	109	Right-handed alpha
Helix 19	AC1	7	117	126	Right-handed alpha
Helix 20	AC2	7	131	154	Right-handed alpha
Helix 21	AC3	7	179	183	Right-handed 310
Helix 22	AC4	7	190	223	Right-handed alpha
Helix 23	AC5	7	225	236	Right-handed alpha
Helix 24	AC6	8	40	45	Right-handed alpha
Helix 25	AC7	8	62	97	Right-handed alpha
Helix 26	AC8	8	106	113	Right-handed alpha
Helix 27	AC9	8	119	144	Right-handed alpha
Helix 28	AD1	8	146	150	Right-handed 310
Helix 29	AD2	8	170	174	Right-handed 310
Helix 30	AD3	8	182	215	Right-handed alpha
Helix 31	AD4	8	217	228	Right-handed alpha
Helix 32	AD5	8	243	253	Right-handed alpha
Helix 33	AD6	A	26	31	Right-handed alpha
Helix 34	AD7	A	36	41	Right-handed alpha
Helix 35	AD8	A	45	55	Right-handed alpha
Helix 36	AD9	A	58	63	Right-handed alpha
Helix 37	AE1	A	65	97	Right-handed alpha
Helix 38	AE2	A	100	107	Right-handed alpha
Helix 39	AE3	A	123	128	Right-handed 310
Helix 40	AE4	A	143	151	Right-handed alpha
Helix 41	AE5	A	155	183	Right-handed alpha
Helix 42	AE6	A	187	192	Right-handed alpha
Helix 43	AE7	A	193	204	Right-handed alpha
Helix 44	AE8	A	206	220	Right-handed alpha
Helix 45	AE9	A	220	231	Right-handed alpha
Helix 46	AF1	A	239	246	Right-handed alpha
Helix 47	AF2	A	246	254	Right-handed alpha
Helix 48	AF3	A	255	259	Right-handed 310
Helix 49	AF4	A	261	266	Right-handed alpha
Helix 50	AF5	A	268	275	Right-handed 310
Helix 51	AF6	A	290	309	Right-handed alpha
Helix 52	AF7	A	321	329	Right-handed alpha
Helix 53	AF8	A	340	346	Right-handed alpha
Helix 54	AF9	A	348	374	Right-handed alpha
Helix 55	AG1	A	383	415	Right-handed alpha
Helix 56	AG2	A	425	433	Right-handed alpha
Helix 57	AG3	A	433	465	Right-handed alpha
Helix 58	AG4	A	467	471	Right-handed 310
Helix 59	AG5	A	481	493	Right-handed alpha
Helix 60	AG6	A	529	556	Right-handed alpha
Helix 61	AG7	A	587	618	Right-handed alpha
Helix 62	AG8	A	634	639	Right-handed alpha
Helix 63	AG9	A	641	648	Right-handed alpha
Helix 64	AH1	A	654	659	Right-handed alpha
Helix 65	AH2	A	665	687	Right-handed alpha
Helix 66	AH3	A	690	707	Right-handed alpha
Helix 67	AH4	A	719	750	Right-handed alpha
Helix 68	AH5	B	10	15	Right-handed alpha
Helix 69	AH6	B	19	28	Right-handed alpha
Helix 70	AH7	B	31	35	Right-handed 310
Helix 71	AH8	B	39	71	Right-handed alpha
Helix 72	AH9	B	74	81	Right-handed alpha
Helix 73	AI1	B	98	105	Right-handed alpha
Helix 74	AI2	B	120	129	Right-handed alpha
Helix 75	AI3	B	132	159	Right-handed alpha
Helix 76	AI4	B	165	171	Right-handed alpha
Helix 77	AI5	B	171	182	Right-handed alpha
Helix 78	AI6	B	184	204	Right-handed alpha
Helix 79	AI7	B	223	229	Right-handed alpha
Helix 80	AI8	B	230	234	Right-handed 310
Helix 81	AI9	B	270	288	Right-handed alpha
Helix 82	AJ1	B	301	309	Right-handed alpha
Helix 83	AJ2	B	311	315	Right-handed 310
Helix 84	AJ3	B	322	330	Right-handed alpha
Helix 85	AJ4	B	330	354	Right-handed alpha
Helix 86	AJ5	B	365	398	Right-handed alpha
Helix 87	AJ6	B	407	415	Right-handed alpha
Helix 88	AJ7	B	415	447	Right-handed alpha
Helix 89	AJ8	B	449	453	Right-handed 310
Helix 90	AJ9	B	458	468	Right-handed alpha
Helix 91	AK1	B	484	489	Right-handed alpha
Helix 92	AK2	B	494	504	Right-handed alpha
Helix 93	AK3	B	514	541	Right-handed alpha
Helix 94	AK4	B	563	567	Right-handed 310
Helix 95	AK5	B	572	605	Right-handed alpha
Helix 96	AK6	B	606	614	Right-handed alpha
Helix 97	AK7	B	616	623	Right-handed alpha
Helix 98	AK8	B	629	634	Right-handed alpha
Helix 99	AK9	B	644	667	Right-handed alpha
Helix 100	AL1	B	668	685	Right-handed alpha
Helix 101	AL2	B	702	732	Right-handed alpha
Helix 102	AL3	C	15	21	Right-handed alpha
Helix 103	AL4	C	44	48	Right-handed 310
Helix 104	AL5	C	52	57	Right-handed alpha
Helix 105	AL6	D	74	79	Right-handed 310
Helix 106	AL7	D	116	131	Right-handed alpha
Helix 107	AL8	E	101	103	Right-handed 310
Helix 108	AL9	F	63	67	Right-handed 310
Helix 109	AM1	F	74	92	Right-handed alpha
Helix 110	AM2	F	98	119	Right-handed alpha
Helix 111	AM3	F	145	174	Right-handed alpha
Helix 112	AM4	F	179	186	Right-handed alpha
Helix 113	AM5	F	188	198	Right-handed alpha
Helix 114	AM6	F	201	213	Right-handed alpha
Helix 115	AM7	J	2	9	Right-handed alpha
Helix 116	AM8	J	10	33	Right-handed alpha
Helix 117	AM9	K	45	64	Right-handed alpha
Helix 118	AN1	K	95	120	Right-handed alpha
Helix 119	AN2	T	158	189	Right-handed alpha
Helix 120	AN3	T	199	204	Right-handed alpha
Helix 121	AN4	T	228	253	Right-handed alpha
Helix 122	AN5	T	256	260	Right-handed 310
Helix 123	AN6	T	292	325	Right-handed alpha
Helix 124	AN7	T	327	338	Right-handed alpha
Helix 125	AN8	a	64	95	Right-handed alpha
Helix 126	AN9	a	102	104	Right-handed 310
Helix 127	AO1	a	105	110	Right-handed alpha
Helix 128	AO2	a	123	144	Right-handed alpha
Helix 129	AO3	a	147	153	Right-handed alpha
Helix 130	AO4	a	155	159	Right-handed 310
Helix 131	AO5	a	166	198	Right-handed alpha
Helix 132	AO6	a	201	212	Right-handed alpha
Helix 133	AO7	a	217	222	Right-handed alpha
Helix 134	AO8	b	62	96	Right-handed alpha
Helix 135	AO9	b	106	113	Right-handed alpha
Helix 136	AP1	b	119	144	Right-handed alpha
Helix 137	AP2	b	156	161	Right-handed 310
Helix 138	AP3	b	182	214	Right-handed alpha
Helix 139	AP4	b	217	228	Right-handed alpha
Helix 140	AP5	b	243	251	Right-handed alpha
Helix 141	AP6	c	74	109	Right-handed alpha
Helix 142	AP7	c	117	126	Right-handed alpha
Helix 143	AP8	c	131	154	Right-handed alpha
Helix 144	AP9	c	190	222	Right-handed alpha
Helix 145	AQ1	c	225	236	Right-handed alpha
Helix 146	AQ2	L	64	73	Right-handed alpha
Helix 147	AQ3	L	82	103	Right-handed alpha
Helix 148	AQ4	L	113	142	Right-handed alpha
Helix 149	AQ5	L	161	164	Right-handed 310
Helix 150	AQ6	L	165	193	Right-handed alpha
Helix 151	AQ7	I	20	31	Right-handed alpha
Helix 152	AQ8	I	31	46	Right-handed alpha

There are 13 sheets in PDB entry 9MGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	3	92	93	first strand
Strand 2	A	17	19	parallel
Strand 3	A	184	186	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	136	139	anti-parallel
Strand 3	A	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	515	517	first strand
Strand 2	A	520	523	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	620	622	first strand
Strand 2	A	627	629	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	91	first strand
Strand 2	B	114	116	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	456	457	first strand
Strand 2	F	131	134	parallel
Strand 3	F	124	125	anti-parallel
Strand 4	F	68	69	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	4	7	first strand
Strand 2	C	65	68	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	30	first strand
Strand 2	C	38	41	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	114	first strand
Strand 2	D	82	89	anti-parallel
Strand 3	D	136	140	anti-parallel
Strand 4	D	146	148	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	96	first strand
Strand 2	D	102	105	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	97	100	first strand
Strand 2	E	83	86	anti-parallel
Strand 3	E	68	74	anti-parallel
Strand 4	E	54	57	anti-parallel
Strand 5	E	105	106	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	73	first strand
Strand 2	K	79	80	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	171	172	first strand
Strand 2	c	178	179	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MGZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MGZ