Analysis of interatomic Contacts of Structural Units in PDB entry:
9MHF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MHF entry

There are 5 chains in PDB entry 9MHF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 14	LYS 1358
B	MET 1	ARG 275
C	ASP 71	VAL 397
D	ASP 146	LYS 450
E	ASN 5	MET 176

There are 80 helices in PDB entry 9MHF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	23	Right-handed 310
Helix 2	AA2	A	64	78	Right-handed alpha
Helix 3	AA3	A	110	114	Right-handed alpha
Helix 4	AA4	A	121	143	Right-handed alpha
Helix 5	AA5	A	180	187	Right-handed alpha
Helix 6	AA6	A	198	200	Right-handed 310
Helix 7	AA7	A	236	253	Right-handed alpha
Helix 8	AA8	A	260	270	Right-handed alpha
Helix 9	AA9	A	274	279	Right-handed alpha
Helix 10	AB1	A	283	294	Right-handed alpha
Helix 11	AB2	A	297	301	Right-handed 310
Helix 12	AB3	A	303	311	Right-handed alpha
Helix 13	AB4	A	317	323	Right-handed alpha
Helix 14	AB5	A	323	329	Right-handed alpha
Helix 15	AB6	A	330	332	Right-handed 310
Helix 16	AB7	A	338	349	Right-handed alpha
Helix 17	AB8	A	349	358	Right-handed alpha
Helix 18	AB9	A	374	383	Right-handed alpha
Helix 19	AC1	A	385	389	Right-handed 310
Helix 20	AC2	A	391	406	Right-handed alpha
Helix 21	AC3	A	407	409	Right-handed 310
Helix 22	AC4	A	410	417	Right-handed alpha
Helix 23	AC5	A	418	426	Right-handed alpha
Helix 24	AC6	A	430	447	Right-handed alpha
Helix 25	AC7	A	452	456	Right-handed 310
Helix 26	AC8	A	457	462	Right-handed alpha
Helix 27	AC9	A	462	468	Right-handed alpha
Helix 28	AD1	A	469	473	Right-handed 310
Helix 29	AD2	A	475	509	Right-handed alpha
Helix 30	AD3	A	527	546	Right-handed alpha
Helix 31	AD4	A	549	576	Right-handed alpha
Helix 32	AD5	A	576	583	Right-handed alpha
Helix 33	AD6	A	584	587	Right-handed 310
Helix 34	AD7	A	590	609	Right-handed alpha
Helix 35	AD8	A	612	624	Right-handed alpha
Helix 36	AD9	A	628	645	Right-handed alpha
Helix 37	AE1	A	649	661	Right-handed alpha
Helix 38	AE2	A	662	666	Right-handed 310
Helix 39	AE3	A	668	686	Right-handed alpha
Helix 40	AE4	A	687	694	Right-handed alpha
Helix 41	AE5	A	694	700	Right-handed alpha
Helix 42	AE6	A	701	703	Right-handed 310
Helix 43	AE7	A	712	720	Right-handed alpha
Helix 44	AE8	A	725	735	Right-handed alpha
Helix 45	AE9	A	737	753	Right-handed alpha
Helix 46	AF1	A	764	777	Right-handed alpha
Helix 47	AF2	A	780	790	Right-handed alpha
Helix 48	AF3	A	790	809	Right-handed alpha
Helix 49	AF4	A	822	824	Right-handed 310
Helix 50	AF5	A	938	968	Right-handed alpha
Helix 51	AF6	A	1023	1025	Right-handed 310
Helix 52	AF7	A	1272	1276	Right-handed 310
Helix 53	AF8	B	13	15	Right-handed 310
Helix 54	AF9	B	34	41	Right-handed alpha
Helix 55	AG1	B	42	46	Right-handed 310
Helix 56	AG2	B	47	52	Right-handed alpha
Helix 57	AG3	B	98	100	Right-handed 310
Helix 58	AG4	B	172	184	Right-handed alpha
Helix 59	AG5	B	190	212	Right-handed alpha
Helix 60	AG6	B	264	275	Right-handed alpha
Helix 61	AG7	C	74	205	Right-handed alpha
Helix 62	AG8	C	276	281	Right-handed alpha
Helix 63	AG9	C	299	322	Right-handed alpha
Helix 64	AH1	C	330	335	Right-handed 310
Helix 65	AH2	C	340	362	Right-handed alpha
Helix 66	AH3	C	365	369	Right-handed 310
Helix 67	AH4	C	373	383	Right-handed alpha
Helix 68	AH5	D	147	172	Right-handed alpha
Helix 69	AH6	D	176	267	Right-handed alpha
Helix 70	AH7	D	268	274	Right-handed alpha
Helix 71	AH8	D	299	322	Right-handed alpha
Helix 72	AH9	D	355	361	Right-handed 310
Helix 73	AI1	D	363	387	Right-handed alpha
Helix 74	AI2	D	421	448	Right-handed alpha
Helix 75	AI3	E	23	33	Right-handed alpha
Helix 76	AI4	E	70	74	Right-handed 310
Helix 77	AI5	E	95	101	Right-handed alpha
Helix 78	AI6	E	101	113	Right-handed alpha
Helix 79	AI7	E	135	147	Right-handed alpha
Helix 80	AI8	E	160	176	Right-handed alpha

There are 18 sheets in PDB entry 9MHF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	34	first strand
Strand 2	A	39	45	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	98	104	anti-parallel
Strand 5	A	89	91	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	162	165	parallel
Strand 3	A	154	156	anti-parallel
Strand 4	A	108	109	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	202	203	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	818	820	first strand
Strand 2	B	223	226	parallel
Strand 3	B	229	234	anti-parallel
Strand 4	B	7	11	parallel
Strand 5	A	829	831	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	985	990	first strand
Strand 2	A	1353	1357	anti-parallel
Strand 3	A	1343	1349	anti-parallel
Strand 4	A	1332	1339	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	996	1001	first strand
Strand 2	A	1007	1012	anti-parallel
Strand 3	A	1017	1021	anti-parallel
Strand 4	A	1036	1038	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1045	1050	first strand
Strand 2	A	1056	1061	anti-parallel
Strand 3	A	1065	1071	anti-parallel
Strand 4	A	1082	1089	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1098	1105	first strand
Strand 2	A	1110	1116	anti-parallel
Strand 3	A	1120	1125	anti-parallel
Strand 4	A	1131	1136	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1144	1149	first strand
Strand 2	A	1155	1160	anti-parallel
Strand 3	A	1164	1169	anti-parallel
Strand 4	A	1174	1180	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1187	1192	first strand
Strand 2	A	1199	1204	anti-parallel
Strand 3	A	1210	1214	anti-parallel
Strand 4	A	1220	1226	anti-parallel
Strand 5	A	1299	1305	parallel
Strand 6	A	1288	1294	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1242	1248	first strand
Strand 2	A	1255	1260	anti-parallel
Strand 3	A	1265	1269	anti-parallel
Strand 4	A	1277	1280	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	74	75	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	105	113	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	139	147	anti-parallel
Strand 6	B	215	221	anti-parallel
Strand 7	B	18	27	anti-parallel
Strand 8	B	85	96	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	260	263	anti-parallel
Strand 3	C	269	271	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	279	first strand
Strand 2	D	282	285	anti-parallel
Strand 3	D	288	290	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	331	first strand
Strand 2	D	338	341	anti-parallel
Strand 3	D	348	350	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	396	397	first strand
Strand 2	D	402	404	anti-parallel
Strand 3	D	412	414	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	55	first strand
Strand 2	E	58	67	anti-parallel
Strand 3	E	10	18	parallel
Strand 4	E	86	92	parallel
Strand 5	E	118	124	parallel
Strand 6	E	150	152	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MHF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MHF