Analysis of interatomic Contacts of Structural Units in PDB entry:
9MHH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MHH entry

There are 5 chains in PDB entry 9MHH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 16	LYS 1358
B	MET 1	LYS 887
C	ALA 56	GLU 406
D	GLU 138	LYS 450
E	MET 1	MET 176

There are113 helices in PDB entry 9MHH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	23	Right-handed 310
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	110	114	Right-handed alpha
Helix 4	AA4	A	121	142	Right-handed alpha
Helix 5	AA5	A	179	184	Right-handed 310
Helix 6	AA6	A	198	200	Right-handed 310
Helix 7	AA7	A	204	209	Right-handed alpha
Helix 8	AA8	A	236	253	Right-handed alpha
Helix 9	AA9	A	260	269	Right-handed alpha
Helix 10	AB1	A	274	280	Right-handed alpha
Helix 11	AB2	A	283	294	Right-handed alpha
Helix 12	AB3	A	297	301	Right-handed 310
Helix 13	AB4	A	303	312	Right-handed alpha
Helix 14	AB5	A	317	323	Right-handed alpha
Helix 15	AB6	A	323	330	Right-handed alpha
Helix 16	AB7	A	331	333	Right-handed 310
Helix 17	AB8	A	338	359	Right-handed alpha
Helix 18	AB9	A	371	384	Right-handed alpha
Helix 19	AC1	A	385	389	Right-handed 310
Helix 20	AC2	A	391	406	Right-handed alpha
Helix 21	AC3	A	407	409	Right-handed 310
Helix 22	AC4	A	410	418	Right-handed alpha
Helix 23	AC5	A	418	426	Right-handed alpha
Helix 24	AC6	A	430	447	Right-handed alpha
Helix 25	AC7	A	452	456	Right-handed 310
Helix 26	AC8	A	457	462	Right-handed alpha
Helix 27	AC9	A	462	468	Right-handed alpha
Helix 28	AD1	A	469	473	Right-handed 310
Helix 29	AD2	A	475	510	Right-handed alpha
Helix 30	AD3	A	525	545	Right-handed alpha
Helix 31	AD4	A	549	569	Right-handed alpha
Helix 32	AD5	A	569	582	Right-handed alpha
Helix 33	AD6	A	583	587	Right-handed 310
Helix 34	AD7	A	590	609	Right-handed alpha
Helix 35	AD8	A	612	624	Right-handed alpha
Helix 36	AD9	A	628	645	Right-handed alpha
Helix 37	AE1	A	649	661	Right-handed alpha
Helix 38	AE2	A	662	666	Right-handed 310
Helix 39	AE3	A	668	686	Right-handed alpha
Helix 40	AE4	A	687	694	Right-handed alpha
Helix 41	AE5	A	694	700	Right-handed alpha
Helix 42	AE6	A	712	720	Right-handed alpha
Helix 43	AE7	A	725	734	Right-handed alpha
Helix 44	AE8	A	737	753	Right-handed alpha
Helix 45	AE9	A	764	777	Right-handed alpha
Helix 46	AF1	A	780	790	Right-handed alpha
Helix 47	AF2	A	790	808	Right-handed alpha
Helix 48	AF3	A	821	825	Right-handed alpha
Helix 49	AF4	A	939	967	Right-handed alpha
Helix 50	AF5	A	1023	1027	Right-handed 310
Helix 51	AF6	A	1138	1142	Right-handed 310
Helix 52	AF7	A	1272	1276	Right-handed 310
Helix 53	AF8	B	13	15	Right-handed 310
Helix 54	AF9	B	34	41	Right-handed alpha
Helix 55	AG1	B	42	51	Right-handed 310
Helix 56	AG2	B	98	100	Right-handed 310
Helix 57	AG3	B	170	184	Right-handed alpha
Helix 58	AG4	B	190	212	Right-handed alpha
Helix 59	AG5	B	264	276	Right-handed alpha
Helix 60	AG6	B	289	301	Right-handed alpha
Helix 61	AG7	B	309	319	Right-handed alpha
Helix 62	AG8	B	319	324	Right-handed alpha
Helix 63	AG9	B	329	337	Right-handed alpha
Helix 64	AH1	B	341	353	Right-handed alpha
Helix 65	AH2	B	359	364	Right-handed alpha
Helix 66	AH3	B	365	368	Right-handed 310
Helix 67	AH4	B	373	385	Right-handed alpha
Helix 68	AH5	B	388	402	Right-handed alpha
Helix 69	AH6	B	403	405	Right-handed 310
Helix 70	AH7	B	407	413	Right-handed alpha
Helix 71	AH8	B	476	484	Right-handed alpha
Helix 72	AH9	B	486	503	Right-handed alpha
Helix 73	AI1	B	503	510	Right-handed alpha
Helix 74	AI2	B	510	530	Right-handed alpha
Helix 75	AI3	B	532	562	Right-handed alpha
Helix 76	AI4	B	565	579	Right-handed alpha
Helix 77	AI5	B	641	661	Right-handed alpha
Helix 78	AI6	B	690	698	Right-handed alpha
Helix 79	AI7	B	699	708	Right-handed alpha
Helix 80	AI8	B	713	717	Right-handed 310
Helix 81	AI9	B	718	739	Right-handed alpha
Helix 82	AJ1	B	745	747	Right-handed 310
Helix 83	AJ2	B	780	787	Right-handed alpha
Helix 84	AJ3	B	792	812	Right-handed alpha
Helix 85	AJ4	B	812	823	Right-handed alpha
Helix 86	AJ5	B	828	834	Right-handed alpha
Helix 87	AJ6	B	834	847	Right-handed alpha
Helix 88	AJ7	B	851	868	Right-handed alpha
Helix 89	AJ8	B	870	887	Right-handed alpha
Helix 90	AJ9	C	57	62	Right-handed alpha
Helix 91	AK1	C	74	205	Right-handed alpha
Helix 92	AK2	C	276	285	Right-handed alpha
Helix 93	AK3	C	298	322	Right-handed alpha
Helix 94	AK4	C	331	336	Right-handed alpha
Helix 95	AK5	C	340	362	Right-handed alpha
Helix 96	AK6	C	373	382	Right-handed alpha
Helix 97	AK7	C	398	406	Right-handed alpha
Helix 98	AK8	D	139	172	Right-handed alpha
Helix 99	AK9	D	176	267	Right-handed alpha
Helix 100	AL1	D	268	274	Right-handed alpha
Helix 101	AL2	D	299	322	Right-handed alpha
Helix 102	AL3	D	333	336	Right-handed 310
Helix 103	AL4	D	355	360	Right-handed alpha
Helix 104	AL5	D	362	387	Right-handed alpha
Helix 105	AL6	D	421	448	Right-handed alpha
Helix 106	AL7	E	23	33	Right-handed alpha
Helix 107	AL8	E	70	74	Right-handed 310
Helix 108	AL9	E	78	82	Right-handed 310
Helix 109	AM1	E	95	101	Right-handed alpha
Helix 110	AM2	E	101	113	Right-handed alpha
Helix 111	AM3	E	128	132	Right-handed 310
Helix 112	AM4	E	135	147	Right-handed alpha
Helix 113	AM5	E	159	176	Right-handed alpha

There are 21 sheets in PDB entry 9MHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	34	first strand
Strand 2	A	39	45	anti-parallel
Strand 3	A	48	56	anti-parallel
Strand 4	A	98	104	anti-parallel
Strand 5	A	89	95	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	154	156	anti-parallel
Strand 3	A	162	164	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	175	176	first strand
Strand 2	A	202	203	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	818	820	first strand
Strand 2	B	223	226	parallel
Strand 3	B	229	234	anti-parallel
Strand 4	B	6	11	parallel
Strand 5	A	829	832	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	984	989	first strand
Strand 2	A	1354	1358	anti-parallel
Strand 3	A	1343	1349	anti-parallel
Strand 4	A	1332	1339	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	996	1001	first strand
Strand 2	A	1007	1012	anti-parallel
Strand 3	A	1017	1021	anti-parallel
Strand 4	A	1036	1038	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1045	1051	first strand
Strand 2	A	1056	1061	anti-parallel
Strand 3	A	1065	1071	anti-parallel
Strand 4	A	1082	1089	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1098	1105	first strand
Strand 2	A	1110	1116	anti-parallel
Strand 3	A	1120	1125	anti-parallel
Strand 4	A	1131	1136	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1144	1149	first strand
Strand 2	A	1155	1160	anti-parallel
Strand 3	A	1164	1169	anti-parallel
Strand 4	A	1174	1180	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1187	1192	first strand
Strand 2	A	1199	1204	anti-parallel
Strand 3	A	1210	1214	anti-parallel
Strand 4	A	1219	1225	anti-parallel
Strand 5	A	1298	1305	parallel
Strand 6	A	1288	1295	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1242	1248	first strand
Strand 2	A	1255	1260	anti-parallel
Strand 3	A	1265	1269	anti-parallel
Strand 4	A	1277	1280	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	96	first strand
Strand 2	B	18	27	anti-parallel
Strand 3	B	216	221	anti-parallel
Strand 4	B	140	144	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	74	75	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	68	69	first strand
Strand 2	B	58	65	anti-parallel
Strand 3	B	104	113	anti-parallel
Strand 4	B	119	128	anti-parallel
Strand 5	B	146	147	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	592	first strand
Strand 2	B	600	611	anti-parallel
Strand 3	B	619	625	anti-parallel
Strand 4	B	630	637	anti-parallel
Strand 5	B	679	683	anti-parallel
Strand 6	B	672	674	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	688	689	first strand
Strand 2	B	749	751	anti-parallel
Strand 3	B	757	759	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	260	263	anti-parallel
Strand 3	C	269	271	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	276	279	first strand
Strand 2	D	282	285	anti-parallel
Strand 3	D	288	290	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	328	331	first strand
Strand 2	D	338	341	anti-parallel
Strand 3	D	348	350	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	395	397	first strand
Strand 2	D	402	404	anti-parallel
Strand 3	D	412	414	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	55	first strand
Strand 2	E	58	65	anti-parallel
Strand 3	E	10	17	parallel
Strand 4	E	88	92	parallel
Strand 5	E	121	124	parallel
Strand 6	E	150	152	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MHH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MHH