Analysis of interatomic Contacts of Structural Units in PDB entry:
9MI8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MI8 entry

There are 2 chains in PDB entry 9MI8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5SER 776
B
 G 1 A 48
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9MI8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 61Right-handed alpha
Helix 2
AA2
A
73 77Right-handed 310
Helix 3
AA3
A
78 89Right-handed alpha
Helix 4
AA4
A
159 166Right-handed alpha
Helix 5
AA5
A
173 177Right-handed 310
Helix 6
AA6
A
183 187Right-handed 310
Helix 7
AA7
A
188 199Right-handed alpha
Helix 8
AA8
A
224 250Right-handed alpha
Helix 9
AA9
A
251 254Right-handed 310
Helix 10
AB1
A
257 267Right-handed alpha
Helix 11
AB2
A
275 290Right-handed alpha
Helix 12
AB3
A
339 344Right-handed alpha
Helix 13
AB4
A
345 350Right-handed 310
Helix 14
AB5
A
609 622Right-handed alpha
Helix 15
AB6
A
702 723Right-handed alpha
Helix 16
AB7
A
725 740Right-handed alpha
Helix 17
AB8
A
754 776Right-handed alpha
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There are 9 sheets in PDB entry 9MI8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
9 12anti-parallel
Strand 4
A
71 72parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 158first strand
Strand 2
A
137 141anti-parallel
Strand 3
A
113 117anti-parallel
Strand 4
A
181 182parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
330 331anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
309 311anti-parallel
Strand 3
A
324 325anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
544 545first strand
Strand 2
A
575 576anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
547 548first strand
Strand 2
A
551 552anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 558first strand
Strand 2
A
569 570anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
586 587anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
589 590first strand
Strand 2
A
597 598anti-parallel
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