Analysis of interatomic Contacts of Structural Units in PDB entry:
9MIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MIP entry

There are 3 chains in PDB entry 9MIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7ALA 589
B
 PRO 21ALA 449
C
 ASP 2LEU 309
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 9MIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 22Right-handed alpha
Helix 2
AA2
A
24 34Right-handed alpha
Helix 3
AA3
A
34 59Right-handed alpha
Helix 4
AA4
A
62 75Right-handed alpha
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
A
89 98Right-handed alpha
Helix 7
AA7
A
101 117Right-handed alpha
Helix 8
AA8
A
120 127Right-handed alpha
Helix 9
AA9
A
127 137Right-handed alpha
Helix 10
AB1
A
140 149Right-handed alpha
Helix 11
AB2
A
150 155Right-handed alpha
Helix 12
AB3
A
156 158Right-handed 310
Helix 13
AB4
A
159 175Right-handed alpha
Helix 14
AB5
A
178 196Right-handed alpha
Helix 15
AB6
A
197 214Right-handed alpha
Helix 16
AB7
A
217 235Right-handed alpha
Helix 17
AB8
A
236 244Right-handed alpha
Helix 18
AB9
A
244 253Right-handed alpha
Helix 19
AC1
A
256 266Right-handed alpha
Helix 20
AC2
A
266 275Right-handed alpha
Helix 21
AC3
A
275 292Right-handed alpha
Helix 22
AC4
A
295 312Right-handed alpha
Helix 23
AC5
A
317 335Right-handed alpha
Helix 24
AC6
A
338 350Right-handed alpha
Helix 25
AC7
A
351 356Right-handed alpha
Helix 26
AC8
A
357 375Right-handed alpha
Helix 27
AC9
A
377 387Right-handed alpha
Helix 28
AD1
A
390 395Right-handed alpha
Helix 29
AD2
A
396 412Right-handed alpha
Helix 30
AD3
A
416 435Right-handed alpha
Helix 31
AD4
A
435 443Right-handed alpha
Helix 32
AD5
A
443 452Right-handed alpha
Helix 33
AD6
A
455 474Right-handed alpha
Helix 34
AD7
A
474 482Right-handed alpha
Helix 35
AD8
A
482 489Right-handed alpha
Helix 36
AD9
A
490 492Right-handed 310
Helix 37
AE1
A
494 529Right-handed alpha
Helix 38
AE2
A
533 548Right-handed alpha
Helix 39
AE3
A
552 559Right-handed alpha
Helix 40
AE4
A
559 569Right-handed alpha
Helix 41
AE5
A
572 587Right-handed alpha
Helix 42
AE6
B
37 49Right-handed alpha
Helix 43
AE7
B
62 80Right-handed alpha
Helix 44
AE8
B
90 104Right-handed alpha
Helix 45
AE9
B
130 147Right-handed alpha
Helix 46
AF1
B
151 157Right-handed alpha
Helix 47
AF2
B
160 170Right-handed alpha
Helix 48
AF3
B
171 173Right-handed 310
Helix 49
AF4
B
175 193Right-handed alpha
Helix 50
AF5
B
196 214Right-handed alpha
Helix 51
AF6
B
220 234Right-handed alpha
Helix 52
AF7
B
240 250Right-handed alpha
Helix 53
AF8
B
251 257Right-handed 310
Helix 54
AF9
B
259 278Right-handed alpha
Helix 55
AG1
B
281 292Right-handed alpha
Helix 56
AG2
B
297 315Right-handed alpha
Helix 57
AG3
B
316 336Right-handed alpha
Helix 58
AG4
B
339 348Right-handed alpha
Helix 59
AG5
B
349 351Right-handed 310
Helix 60
AG6
B
352 377Right-handed alpha
Helix 61
AG7
B
383 401Right-handed alpha
Helix 62
AG8
B
401 435Right-handed alpha
Helix 63
AG9
C
3 19Right-handed alpha
Helix 64
AH1
C
24 40Right-handed alpha
Helix 65
AH2
C
61 72Right-handed alpha
Helix 66
AH3
C
92 106Right-handed alpha
Helix 67
AH4
C
116 119Right-handed 310
Helix 68
AH5
C
120 127Right-handed alpha
Helix 69
AH6
C
129 138Right-handed alpha
Helix 70
AH7
C
140 152Right-handed alpha
Helix 71
AH8
C
176 183Right-handed alpha
Helix 72
AH9
C
193 199Right-handed alpha
Helix 73
AI1
C
221 233Right-handed alpha
Helix 74
AI2
C
264 268Right-handed 310
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There are 2 sheets in PDB entry 9MIP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
47 48first strand
Strand 2
C
156 159parallel
Strand 3
C
163 166anti-parallel
Strand 4
C
236 239parallel
Strand 5
C
256 259parallel
Strand 6
C
248 250anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 114first strand
Strand 2
C
80 83parallel
Strand 3
C
53 55parallel
Strand 4
C
273 278anti-parallel
Strand 5
C
284 289anti-parallel
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