Analysis of interatomic Contacts of Structural Units in PDB entry:
9MIV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MIV entry

There are 12 chains in PDB entry 9MIV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	GLY 260	THR 426
A	THR 59	LEU 259
B	THR 59	LEU 259
C	THR 59	LEU 259
H	GLN 1	ALA 125
L	GLU 1	ILE 106
E	GLU 1	ILE 106
G	GLU 1	ILE 106
D	GLN 1	ALA 125
F	GLN 1	ALA 125
b	GLY 260	THR 426
c	GLY 260	THR 426

There are 49 helices in PDB entry 9MIV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	294	301	Right-handed alpha
Helix 2	AA2	a	307	326	Right-handed alpha
Helix 3	AA3	a	333	345	Right-handed alpha
Helix 4	AA4	a	346	359	Right-handed alpha
Helix 5	AA5	a	395	426	Right-handed alpha
Helix 6	AA6	A	74	79	Right-handed 310
Helix 7	AA7	A	119	127	Right-handed alpha
Helix 8	AA8	A	130	144	Right-handed alpha
Helix 9	AA9	A	149	151	Right-handed 310
Helix 10	AB1	A	157	161	Right-handed 310
Helix 11	AB2	A	182	195	Right-handed alpha
Helix 12	AB3	A	199	203	Right-handed 310
Helix 13	AB4	A	238	248	Right-handed alpha
Helix 14	AB5	B	74	79	Right-handed 310
Helix 15	AB6	B	119	127	Right-handed alpha
Helix 16	AB7	B	130	144	Right-handed alpha
Helix 17	AB8	B	149	151	Right-handed 310
Helix 18	AB9	B	157	161	Right-handed 310
Helix 19	AC1	B	182	195	Right-handed alpha
Helix 20	AC2	B	199	203	Right-handed 310
Helix 21	AC3	B	238	246	Right-handed alpha
Helix 22	AC4	C	74	79	Right-handed 310
Helix 23	AC5	C	119	127	Right-handed alpha
Helix 24	AC6	C	130	144	Right-handed alpha
Helix 25	AC7	C	149	151	Right-handed 310
Helix 26	AC8	C	157	161	Right-handed 310
Helix 27	AC9	C	182	195	Right-handed alpha
Helix 28	AD1	C	199	203	Right-handed 310
Helix 29	AD2	C	238	246	Right-handed alpha
Helix 30	AD3	H	61	64	Right-handed 310
Helix 31	AD4	H	86	90	Right-handed 310
Helix 32	AD5	L	79	83	Right-handed 310
Helix 33	AD6	E	79	83	Right-handed 310
Helix 34	AD7	G	79	83	Right-handed 310
Helix 35	AD8	D	63	65	Right-handed 310
Helix 36	AD9	D	86	90	Right-handed 310
Helix 37	AE1	F	86	90	Right-handed 310
Helix 38	AE2	b	281	285	Right-handed 310
Helix 39	AE3	b	294	301	Right-handed alpha
Helix 40	AE4	b	307	326	Right-handed alpha
Helix 41	AE5	b	333	345	Right-handed alpha
Helix 42	AE6	b	346	359	Right-handed alpha
Helix 43	AE7	b	395	398	Right-handed 310
Helix 44	AE8	b	399	426	Right-handed alpha
Helix 45	AE9	c	294	301	Right-handed alpha
Helix 46	AF1	c	307	326	Right-handed alpha
Helix 47	AF2	c	333	345	Right-handed alpha
Helix 48	AF3	c	346	359	Right-handed alpha
Helix 49	AF4	c	395	426	Right-handed alpha

There are 30 sheets in PDB entry 9MIV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	278	280	first strand
Strand 2	a	291	293	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	384	385	first strand
Strand 2	a	368	374	anti-parallel
Strand 3	A	66	72	anti-parallel
Strand 4	A	61	62	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	388	389	first strand
Strand 2	a	392	393	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	A	163	167	anti-parallel
Strand 6	A	153	156	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	66	72	anti-parallel
Strand 3	b	368	374	anti-parallel
Strand 4	b	384	385	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	219	226	anti-parallel
Strand 5	B	163	167	anti-parallel
Strand 6	B	153	156	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	c	368	374	anti-parallel
Strand 4	c	384	385	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	219	225	anti-parallel
Strand 5	C	163	167	anti-parallel
Strand 6	C	153	156	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	83	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	91	101	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	91	101	anti-parallel
Strand 4	H	108	114	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	92	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	92	anti-parallel
Strand 4	E	95	98	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	102	105	parallel
Strand 3	G	85	92	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	102	105	parallel
Strand 3	G	85	92	anti-parallel
Strand 4	G	95	98	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	77	83	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	91	101	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	91	101	anti-parallel
Strand 4	D	108	114	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	17	25	anti-parallel
Strand 3	F	77	83	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	118	122	parallel
Strand 3	F	91	101	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	118	122	parallel
Strand 3	F	91	101	anti-parallel
Strand 4	F	108	114	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	278	280	first strand
Strand 2	b	291	293	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	388	389	first strand
Strand 2	b	392	393	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	278	280	first strand
Strand 2	c	291	293	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	388	389	first strand
Strand 2	c	392	393	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MIV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MIV