Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MJ1 entry

There are 12 chains in PDB entry 9MJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	GLY 260	LEU 449
A	GLY 2	LEU 259
B	GLY 2	LEU 259
C	GLY 2	LEU 259
b	GLY 260	LEU 449
c	GLY 260	LEU 449
H	GLN 1	ALA 125
L	GLU 1	ILE 106
E	GLU 1	ILE 106
G	GLU 1	ILE 106
D	GLN 1	ALA 125
F	GLN 1	ALA 125

There are 60 helices in PDB entry 9MJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	294	301	Right-handed alpha
Helix 2	AA2	a	307	326	Right-handed alpha
Helix 3	AA3	a	333	345	Right-handed alpha
Helix 4	AA4	a	346	359	Right-handed alpha
Helix 5	AA5	a	395	398	Right-handed 310
Helix 6	AA6	a	399	424	Right-handed alpha
Helix 7	AA7	a	427	449	Right-handed alpha
Helix 8	AA8	A	3	10	Right-handed alpha
Helix 9	AA9	A	11	14	Right-handed 310
Helix 10	AB1	A	17	37	Right-handed alpha
Helix 11	AB2	A	74	79	Right-handed 310
Helix 12	AB3	A	119	127	Right-handed alpha
Helix 13	AB4	A	130	144	Right-handed alpha
Helix 14	AB5	A	149	151	Right-handed 310
Helix 15	AB6	A	157	161	Right-handed 310
Helix 16	AB7	A	182	195	Right-handed alpha
Helix 17	AB8	A	199	203	Right-handed 310
Helix 18	AB9	A	238	248	Right-handed alpha
Helix 19	AC1	B	3	10	Right-handed alpha
Helix 20	AC2	B	12	16	Right-handed 310
Helix 21	AC3	B	17	37	Right-handed alpha
Helix 22	AC4	B	74	79	Right-handed 310
Helix 23	AC5	B	119	127	Right-handed alpha
Helix 24	AC6	B	130	144	Right-handed alpha
Helix 25	AC7	B	149	151	Right-handed 310
Helix 26	AC8	B	157	161	Right-handed 310
Helix 27	AC9	B	182	195	Right-handed alpha
Helix 28	AD1	B	199	203	Right-handed 310
Helix 29	AD2	B	238	246	Right-handed alpha
Helix 30	AD3	C	3	10	Right-handed alpha
Helix 31	AD4	C	10	15	Right-handed alpha
Helix 32	AD5	C	17	37	Right-handed alpha
Helix 33	AD6	C	74	79	Right-handed 310
Helix 34	AD7	C	119	127	Right-handed alpha
Helix 35	AD8	C	130	144	Right-handed alpha
Helix 36	AD9	C	149	151	Right-handed 310
Helix 37	AE1	C	157	161	Right-handed 310
Helix 38	AE2	C	182	195	Right-handed alpha
Helix 39	AE3	C	199	203	Right-handed 310
Helix 40	AE4	C	238	246	Right-handed alpha
Helix 41	AE5	b	294	301	Right-handed alpha
Helix 42	AE6	b	307	326	Right-handed alpha
Helix 43	AE7	b	333	345	Right-handed alpha
Helix 44	AE8	b	346	359	Right-handed alpha
Helix 45	AE9	b	395	424	Right-handed alpha
Helix 46	AF1	b	427	449	Right-handed alpha
Helix 47	AF2	c	294	301	Right-handed alpha
Helix 48	AF3	c	307	326	Right-handed alpha
Helix 49	AF4	c	333	345	Right-handed alpha
Helix 50	AF5	c	346	359	Right-handed alpha
Helix 51	AF6	c	395	424	Right-handed alpha
Helix 52	AF7	c	427	449	Right-handed alpha
Helix 53	AF8	H	61	64	Right-handed 310
Helix 54	AF9	H	86	90	Right-handed 310
Helix 55	AG1	L	79	83	Right-handed 310
Helix 56	AG2	E	79	83	Right-handed 310
Helix 57	AG3	G	79	83	Right-handed 310
Helix 58	AG4	D	63	65	Right-handed 310
Helix 59	AG5	D	86	90	Right-handed 310
Helix 60	AG6	F	86	90	Right-handed 310

There are 30 sheets in PDB entry 9MJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	278	280	first strand
Strand 2	a	291	293	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	384	385	first strand
Strand 2	a	368	374	anti-parallel
Strand 3	A	66	72	anti-parallel
Strand 4	A	61	62	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	388	389	first strand
Strand 2	a	392	393	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	A	163	167	anti-parallel
Strand 6	A	153	156	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	62	first strand
Strand 2	B	66	72	anti-parallel
Strand 3	b	368	374	anti-parallel
Strand 4	b	384	385	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	219	226	anti-parallel
Strand 5	B	163	167	anti-parallel
Strand 6	B	153	156	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	61	62	first strand
Strand 2	C	66	72	anti-parallel
Strand 3	c	368	374	anti-parallel
Strand 4	c	384	385	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	219	226	anti-parallel
Strand 5	C	163	167	anti-parallel
Strand 6	C	153	156	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	278	280	first strand
Strand 2	b	291	293	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	388	389	first strand
Strand 2	b	392	393	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	278	280	first strand
Strand 2	c	291	293	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	388	389	first strand
Strand 2	c	392	393	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	77	83	anti-parallel
Strand 4	H	67	72	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	91	101	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	57	59	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	118	122	parallel
Strand 3	H	91	101	anti-parallel
Strand 4	H	108	114	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	34	38	anti-parallel
Strand 5	L	45	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	12	first strand
Strand 2	L	102	105	parallel
Strand 3	L	85	92	anti-parallel
Strand 4	L	95	98	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	7	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	92	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	45	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	102	105	parallel
Strand 3	E	85	92	anti-parallel
Strand 4	E	95	98	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	7	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	102	105	parallel
Strand 3	G	85	92	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	12	first strand
Strand 2	G	102	105	parallel
Strand 3	G	85	92	anti-parallel
Strand 4	G	95	98	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	77	83	anti-parallel
Strand 4	D	67	72	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	91	101	anti-parallel
Strand 4	D	33	39	anti-parallel
Strand 5	D	46	51	anti-parallel
Strand 6	D	57	59	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	11	12	first strand
Strand 2	D	118	122	parallel
Strand 3	D	91	101	anti-parallel
Strand 4	D	108	114	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	77	82	anti-parallel
Strand 4	F	67	72	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	118	122	parallel
Strand 3	F	91	101	anti-parallel
Strand 4	F	33	39	anti-parallel
Strand 5	F	46	51	anti-parallel
Strand 6	F	57	59	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	11	12	first strand
Strand 2	F	118	122	parallel
Strand 3	F	91	101	anti-parallel
Strand 4	F	108	114	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJ1