Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJ2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MJ2 entry

There are 6 chains in PDB entry 9MJ2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 59	LEU 259
a	GLY 260	LYS 425
b	GLY 260	LYS 425
c	GLY 260	LYS 425
B	THR 59	LEU 259
C	THR 59	LEU 259

There are 43 helices in PDB entry 9MJ2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	74	79	Right-handed 310
Helix 2	AA2	A	119	127	Right-handed alpha
Helix 3	AA3	A	130	144	Right-handed alpha
Helix 4	AA4	A	149	151	Right-handed 310
Helix 5	AA5	A	157	161	Right-handed 310
Helix 6	AA6	A	182	196	Right-handed alpha
Helix 7	AA7	A	238	246	Right-handed alpha
Helix 8	AA8	a	281	285	Right-handed 310
Helix 9	AA9	a	294	301	Right-handed alpha
Helix 10	AB1	a	307	326	Right-handed alpha
Helix 11	AB2	a	333	345	Right-handed alpha
Helix 12	AB3	a	346	359	Right-handed alpha
Helix 13	AB4	a	395	398	Right-handed 310
Helix 14	AB5	a	399	425	Right-handed alpha
Helix 15	AB6	b	281	285	Right-handed 310
Helix 16	AB7	b	294	300	Right-handed alpha
Helix 17	AB8	b	301	303	Right-handed 310
Helix 18	AB9	b	307	326	Right-handed alpha
Helix 19	AC1	b	333	345	Right-handed alpha
Helix 20	AC2	b	346	359	Right-handed alpha
Helix 21	AC3	b	395	398	Right-handed 310
Helix 22	AC4	b	399	425	Right-handed alpha
Helix 23	AC5	c	281	285	Right-handed 310
Helix 24	AC6	c	294	301	Right-handed alpha
Helix 25	AC7	c	307	326	Right-handed alpha
Helix 26	AC8	c	333	345	Right-handed alpha
Helix 27	AC9	c	346	359	Right-handed alpha
Helix 28	AD1	c	395	398	Right-handed 310
Helix 29	AD2	c	399	425	Right-handed alpha
Helix 30	AD3	B	74	79	Right-handed 310
Helix 31	AD4	B	119	127	Right-handed alpha
Helix 32	AD5	B	130	144	Right-handed alpha
Helix 33	AD6	B	149	151	Right-handed 310
Helix 34	AD7	B	157	161	Right-handed 310
Helix 35	AD8	B	182	196	Right-handed alpha
Helix 36	AD9	B	238	246	Right-handed alpha
Helix 37	AE1	C	74	79	Right-handed 310
Helix 38	AE2	C	119	127	Right-handed alpha
Helix 39	AE3	C	130	143	Right-handed alpha
Helix 40	AE4	C	149	151	Right-handed 310
Helix 41	AE5	C	157	161	Right-handed 310
Helix 42	AE6	C	182	196	Right-handed alpha
Helix 43	AE7	C	238	246	Right-handed alpha

There are 12 sheets in PDB entry 9MJ2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	62	first strand
Strand 2	A	66	72	anti-parallel
Strand 3	a	368	374	anti-parallel
Strand 4	a	384	385	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	87	first strand
Strand 2	A	92	97	anti-parallel
Strand 3	A	101	108	anti-parallel
Strand 4	A	219	226	anti-parallel
Strand 5	A	163	167	anti-parallel
Strand 6	A	153	156	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	278	280	first strand
Strand 2	a	291	293	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	388	389	first strand
Strand 2	a	392	393	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	278	280	first strand
Strand 2	b	291	293	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	384	385	first strand
Strand 2	b	368	374	anti-parallel
Strand 3	B	66	72	anti-parallel
Strand 4	B	61	62	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	388	389	first strand
Strand 2	b	392	393	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	278	280	first strand
Strand 2	c	291	293	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	384	385	first strand
Strand 2	c	368	374	anti-parallel
Strand 3	C	66	72	anti-parallel
Strand 4	C	61	62	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	388	389	first strand
Strand 2	c	392	393	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	87	first strand
Strand 2	B	92	97	anti-parallel
Strand 3	B	101	108	anti-parallel
Strand 4	B	219	226	anti-parallel
Strand 5	B	163	167	anti-parallel
Strand 6	B	153	156	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	87	first strand
Strand 2	C	92	97	anti-parallel
Strand 3	C	101	108	anti-parallel
Strand 4	C	219	226	anti-parallel
Strand 5	C	163	167	anti-parallel
Strand 6	C	153	156	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MJ2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJ2