Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MJ4 entry

There are 16 chains in PDB entry 9MJ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	SER 7	GLU 164
C	SER 16	GLN 213
N	ASP 212	LYS 263
M	MET 1	PHE 71
E	MET 1	VAL 159
O	THR 7	LEU 75
F	MET 1	VAL 159
G	MET 1	VAL 159
H	MET 1	VAL 159
I	MET 1	VAL 159
J	MET 1	VAL 159
K	MET 1	VAL 159
L	MET 1	VAL 159
B	MET 1	TYR 345
A	GLU 3	MET 827
Q	GLN 1	VAL 120

There are125 helices in PDB entry 9MJ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	15	48	Right-handed alpha
Helix 2	AA2	D	52	59	Right-handed 310
Helix 3	AA3	D	60	84	Right-handed alpha
Helix 4	AA4	D	91	128	Right-handed alpha
Helix 5	AA5	D	133	163	Right-handed alpha
Helix 6	AA6	C	17	39	Right-handed alpha
Helix 7	AA7	C	41	45	Right-handed 310
Helix 8	AA8	C	46	54	Right-handed alpha
Helix 9	AA9	C	55	91	Right-handed alpha
Helix 10	AB1	C	92	94	Right-handed 310
Helix 11	AB2	C	95	100	Right-handed alpha
Helix 12	AB3	C	100	123	Right-handed alpha
Helix 13	AB4	C	135	175	Right-handed alpha
Helix 14	AB5	C	177	206	Right-handed alpha
Helix 15	AB6	C	207	209	Right-handed 310
Helix 16	AB7	N	220	245	Right-handed alpha
Helix 17	AB8	N	250	255	Right-handed alpha
Helix 18	AB9	N	259	263	Right-handed 310
Helix 19	AC1	M	3	25	Right-handed alpha
Helix 20	AC2	M	29	54	Right-handed alpha
Helix 21	AC3	E	9	43	Right-handed alpha
Helix 22	AC4	E	46	50	Right-handed 310
Helix 23	AC5	E	54	76	Right-handed alpha
Helix 24	AC6	E	83	122	Right-handed alpha
Helix 25	AC7	E	125	152	Right-handed alpha
Helix 26	AC8	O	8	33	Right-handed alpha
Helix 27	AC9	O	35	40	Right-handed alpha
Helix 28	AD1	O	47	73	Right-handed alpha
Helix 29	AD2	F	8	43	Right-handed alpha
Helix 30	AD3	F	44	45	Right-handed 310
Helix 31	AD4	F	46	48	Right-handed 310
Helix 32	AD5	F	49	54	Right-handed alpha
Helix 33	AD6	F	54	76	Right-handed alpha
Helix 34	AD7	F	83	120	Right-handed alpha
Helix 35	AD8	F	122	124	Right-handed 310
Helix 36	AD9	F	125	154	Right-handed alpha
Helix 37	AE1	G	8	44	Right-handed alpha
Helix 38	AE2	G	46	48	Right-handed 310
Helix 39	AE3	G	49	54	Right-handed alpha
Helix 40	AE4	G	54	76	Right-handed alpha
Helix 41	AE5	G	83	120	Right-handed alpha
Helix 42	AE6	G	124	153	Right-handed alpha
Helix 43	AE7	H	9	44	Right-handed alpha
Helix 44	AE8	H	46	50	Right-handed 310
Helix 45	AE9	H	54	62	Right-handed alpha
Helix 46	AF1	H	62	76	Right-handed alpha
Helix 47	AF2	H	83	122	Right-handed alpha
Helix 48	AF3	H	124	154	Right-handed alpha
Helix 49	AF4	I	9	44	Right-handed alpha
Helix 50	AF5	I	46	48	Right-handed 310
Helix 51	AF6	I	49	54	Right-handed alpha
Helix 52	AF7	I	54	76	Right-handed alpha
Helix 53	AF8	I	83	122	Right-handed alpha
Helix 54	AF9	I	124	155	Right-handed alpha
Helix 55	AG1	J	9	44	Right-handed alpha
Helix 56	AG2	J	46	48	Right-handed 310
Helix 57	AG3	J	49	54	Right-handed alpha
Helix 58	AG4	J	54	76	Right-handed alpha
Helix 59	AG5	J	83	122	Right-handed alpha
Helix 60	AG6	J	125	153	Right-handed alpha
Helix 61	AG7	K	9	43	Right-handed alpha
Helix 62	AG8	K	46	48	Right-handed 310
Helix 63	AG9	K	49	54	Right-handed alpha
Helix 64	AH1	K	54	76	Right-handed alpha
Helix 65	AH2	K	83	122	Right-handed alpha
Helix 66	AH3	K	124	154	Right-handed alpha
Helix 67	AH4	L	9	44	Right-handed alpha
Helix 68	AH5	L	46	48	Right-handed 310
Helix 69	AH6	L	49	54	Right-handed alpha
Helix 70	AH7	L	54	76	Right-handed alpha
Helix 71	AH8	L	83	122	Right-handed alpha
Helix 72	AH9	L	124	152	Right-handed alpha
Helix 73	AI1	B	2	22	Right-handed alpha
Helix 74	AI2	B	26	35	Right-handed alpha
Helix 75	AI3	B	38	47	Right-handed alpha
Helix 76	AI4	B	59	63	Right-handed 310
Helix 77	AI5	B	64	86	Right-handed alpha
Helix 78	AI6	B	88	116	Right-handed alpha
Helix 79	AI7	B	119	124	Right-handed alpha
Helix 80	AI8	B	128	132	Right-handed 310
Helix 81	AI9	B	135	142	Right-handed 310
Helix 82	AJ1	B	144	152	Right-handed alpha
Helix 83	AJ2	B	158	165	Right-handed 310
Helix 84	AJ3	B	173	200	Right-handed alpha
Helix 85	AJ4	B	203	227	Right-handed alpha
Helix 86	AJ5	B	228	230	Right-handed 310
Helix 87	AJ6	B	234	239	Right-handed alpha
Helix 88	AJ7	B	250	259	Right-handed alpha
Helix 89	AJ8	B	261	270	Right-handed alpha
Helix 90	AJ9	B	271	276	Right-handed 310
Helix 91	AK1	B	283	302	Right-handed alpha
Helix 92	AK2	B	306	333	Right-handed alpha
Helix 93	AK3	B	337	341	Right-handed 310
Helix 94	AK4	A	25	37	Right-handed alpha
Helix 95	AK5	A	49	53	Right-handed 310
Helix 96	AK6	A	55	79	Right-handed alpha
Helix 97	AK7	A	103	146	Right-handed alpha
Helix 98	AK8	A	148	153	Right-handed 310
Helix 99	AK9	A	193	207	Right-handed alpha
Helix 100	AL1	A	242	256	Right-handed alpha
Helix 101	AL2	A	266	303	Right-handed alpha
Helix 102	AL3	A	305	324	Right-handed alpha
Helix 103	AL4	A	345	359	Right-handed alpha
Helix 104	AL5	A	384	396	Right-handed alpha
Helix 105	AL6	A	407	424	Right-handed alpha
Helix 106	AL7	A	425	442	Right-handed alpha
Helix 107	AL8	A	442	447	Right-handed alpha
Helix 108	AL9	A	452	461	Right-handed alpha
Helix 109	AM1	A	461	479	Right-handed alpha
Helix 110	AM2	A	519	523	Right-handed 310
Helix 111	AM3	A	527	553	Right-handed alpha
Helix 112	AM4	A	553	562	Right-handed alpha
Helix 113	AM5	A	564	571	Right-handed alpha
Helix 114	AM6	A	571	596	Right-handed alpha
Helix 115	AM7	A	597	602	Right-handed alpha
Helix 116	AM8	A	607	618	Right-handed alpha
Helix 117	AM9	A	629	659	Right-handed alpha
Helix 118	AN1	A	707	733	Right-handed alpha
Helix 119	AN2	A	734	753	Right-handed alpha
Helix 120	AN3	A	754	759	Right-handed alpha
Helix 121	AN4	A	762	784	Right-handed alpha
Helix 122	AN5	A	787	803	Right-handed alpha
Helix 123	AN6	A	805	809	Right-handed 310
Helix 124	AN7	Q	60	65	Right-handed alpha
Helix 125	AN8	Q	86	90	Right-handed 310

There are 8 sheets in PDB entry 9MJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	63	64	first strand
Strand 2	A	506	507	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	327	328	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	40	41	first strand
Strand 2	A	334	342	anti-parallel
Strand 3	A	14	22	anti-parallel
Strand 4	A	368	371	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	223	first strand
Strand 2	A	230	239	anti-parallel
Strand 3	A	186	192	anti-parallel
Strand 4	A	258	260	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	509	510	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	5	8	first strand
Strand 2	Q	18	23	anti-parallel
Strand 3	Q	79	82	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	10	11	first strand
Strand 2	Q	118	119	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	45	51	first strand
Strand 2	Q	32	39	anti-parallel
Strand 3	Q	92	99	anti-parallel
Strand 4	Q	109	112	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MJ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJ4