Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MJ5 entry

There are 6 chains in PDB entry 9MJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 2	GLN 119
B	ALA 43	ALA 269
C	SER 438	MET 616
P	G 1	C 11
S	GLU 337	THR 1244
T	T 5	C 35

There are 46 helices in PDB entry 9MJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	7	Right-handed 310
Helix 2	AA2	A	13	20	Right-handed 310
Helix 3	AA3	A	95	109	Right-handed alpha
Helix 4	AA4	A	110	113	Right-handed 310
Helix 5	AA5	B	50	57	Right-handed alpha
Helix 6	AA6	B	115	119	Right-handed 310
Helix 7	AA7	B	153	175	Right-handed alpha
Helix 8	AA8	B	206	219	Right-handed alpha
Helix 9	AA9	B	226	234	Right-handed alpha
Helix 10	AB1	B	238	252	Right-handed alpha
Helix 11	AB2	C	444	452	Right-handed alpha
Helix 12	AB3	C	532	541	Right-handed alpha
Helix 13	AB4	C	543	554	Right-handed alpha
Helix 14	AB5	C	554	565	Right-handed alpha
Helix 15	AB6	C	599	616	Right-handed alpha
Helix 16	AB7	S	409	420	Right-handed alpha
Helix 17	AB8	S	420	426	Right-handed alpha
Helix 18	AB9	S	482	492	Right-handed alpha
Helix 19	AC1	S	597	606	Right-handed alpha
Helix 20	AC2	S	614	630	Right-handed alpha
Helix 21	AC3	S	642	655	Right-handed alpha
Helix 22	AC4	S	658	663	Right-handed 310
Helix 23	AC5	S	678	685	Right-handed alpha
Helix 24	AC6	S	693	701	Right-handed alpha
Helix 25	AC7	S	707	716	Right-handed alpha
Helix 26	AC8	S	725	733	Right-handed 310
Helix 27	AC9	S	734	760	Right-handed alpha
Helix 28	AD1	S	760	773	Right-handed alpha
Helix 29	AD2	S	775	782	Right-handed alpha
Helix 30	AD3	S	784	799	Right-handed alpha
Helix 31	AD4	S	863	873	Right-handed alpha
Helix 32	AD5	S	909	931	Right-handed alpha
Helix 33	AD6	S	935	959	Right-handed alpha
Helix 34	AD7	S	960	962	Right-handed 310
Helix 35	AD8	S	970	994	Right-handed alpha
Helix 36	AD9	S	1014	1031	Right-handed alpha
Helix 37	AE1	S	1085	1101	Right-handed alpha
Helix 38	AE2	S	1104	1126	Right-handed alpha
Helix 39	AE3	S	1129	1134	Right-handed 310
Helix 40	AE4	S	1142	1146	Right-handed 310
Helix 41	AE5	S	1152	1165	Right-handed alpha
Helix 42	AE6	S	1187	1190	Right-handed 310
Helix 43	AE7	S	1194	1201	Right-handed alpha
Helix 44	AE8	S	1207	1215	Right-handed alpha
Helix 45	AE9	S	1216	1224	Right-handed alpha
Helix 46	AF1	S	1231	1239	Right-handed alpha

There are 15 sheets in PDB entry 9MJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	24	34	parallel
Strand 3	A	40	44	anti-parallel
Strand 4	A	50	54	anti-parallel
Strand 5	A	79	80	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	24	34	parallel
Strand 3	A	66	72	anti-parallel
Strand 4	A	83	86	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	46	48	first strand
Strand 2	B	73	85	parallel
Strand 3	B	125	135	anti-parallel
Strand 4	B	138	148	anti-parallel
Strand 5	B	102	107	parallel
Strand 6	B	89	95	anti-parallel
Strand 7	B	73	85	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	63	66	anti-parallel
Strand 3	B	69	70	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	255	256	first strand
Strand 2	B	265	266	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	460	471	first strand
Strand 2	C	517	521	anti-parallel
Strand 3	C	526	530	anti-parallel
Strand 4	C	585	596	parallel
Strand 5	C	569	580	anti-parallel
Strand 6	C	460	471	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	477	480	first strand
Strand 2	C	511	514	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	491	492	first strand
Strand 2	C	498	500	anti-parallel
Strand 3	C	505	507	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	516	520	first strand
Strand 2	S	372	380	parallel
Strand 3	S	359	367	anti-parallel
Strand 4	S	340	349	anti-parallel
Strand 5	S	498	502	anti-parallel
Strand 6	S	526	528	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	431	438	first strand
Strand 2	S	449	458	anti-parallel
Strand 3	S	384	391	anti-parallel
Strand 4	S	473	477	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	394	396	first strand
Strand 2	S	403	407	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	609	611	first strand
Strand 2	S	581	586	parallel
Strand 3	S	555	568	anti-parallel
Strand 4	S	537	548	anti-parallel
Strand 5	S	633	636	parallel
Strand 6	S	689	692	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	850	852	first strand
Strand 2	S	1038	1051	anti-parallel
Strand 3	S	856	861	anti-parallel
Strand 4	S	1005	1009	anti-parallel
Strand 5	S	997	1000	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	850	852	first strand
Strand 2	S	1038	1051	anti-parallel
Strand 3	S	1054	1062	anti-parallel
Strand 4	S	1068	1075	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	1135	1138	first strand
Strand 2	S	1174	1179	anti-parallel
Strand 3	S	1192	1193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJ5