Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MJ9 entry

There are 4 chains in PDB entry 9MJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 854
B
 MET 1SER 854
C
 ASP 2155ASP 2155
C
 LEU 2157LEU 2170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 77 helices in PDB entry 9MJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
43 47Right-handed 310
Helix 3
AA3
A
68 74Right-handed alpha
Helix 4
AA4
A
76 93Right-handed alpha
Helix 5
AA5
A
96 101Right-handed 310
Helix 6
AA6
A
114 120Right-handed alpha
Helix 7
AA7
A
129 136Right-handed alpha
Helix 8
AA8
A
138 149Right-handed alpha
Helix 9
AA9
A
159 161Right-handed 310
Helix 10
AB1
A
162 177Right-handed alpha
Helix 11
AB2
A
193 203Right-handed alpha
Helix 12
AB3
A
237 239Right-handed 310
Helix 13
AB4
A
265 281Right-handed alpha
Helix 14
AB5
A
283 285Right-handed 310
Helix 15
AB6
A
299 312Right-handed alpha
Helix 16
AB7
A
325 330Right-handed alpha
Helix 17
AB8
A
335 351Right-handed alpha
Helix 18
AB9
A
366 370Right-handed 310
Helix 19
AC1
A
415 420Right-handed 310
Helix 20
AC2
A
430 444Right-handed alpha
Helix 21
AC3
A
447 457Right-handed alpha
Helix 22
AC4
A
507 512Right-handed 310
Helix 23
AC5
A
513 528Right-handed alpha
Helix 24
AC6
A
533 540Right-handed alpha
Helix 25
AC7
A
548 570Right-handed alpha
Helix 26
AC8
A
581 592Right-handed alpha
Helix 27
AC9
A
595 613Right-handed alpha
Helix 28
AD1
A
626 634Right-handed alpha
Helix 29
AD2
A
654 667Right-handed alpha
Helix 30
AD3
A
690 699Right-handed alpha
Helix 31
AD4
A
718 722Right-handed 310
Helix 32
AD5
A
731 740Right-handed alpha
Helix 33
AD6
A
748 752Right-handed 310
Helix 34
AD7
A
767 775Right-handed alpha
Helix 35
AD8
A
791 807Right-handed alpha
Helix 36
AD9
A
811 815Right-handed 310
Helix 37
AE1
A
830 834Right-handed 310
Helix 38
AE2
A
846 850Right-handed 310
Helix 39
AE3
B
18 29Right-handed alpha
Helix 40
AE4
B
43 47Right-handed 310
Helix 41
AE5
B
68 74Right-handed alpha
Helix 42
AE6
B
76 93Right-handed alpha
Helix 43
AE7
B
96 101Right-handed 310
Helix 44
AE8
B
114 120Right-handed alpha
Helix 45
AE9
B
129 136Right-handed alpha
Helix 46
AF1
B
138 149Right-handed alpha
Helix 47
AF2
B
159 161Right-handed 310
Helix 48
AF3
B
162 177Right-handed alpha
Helix 49
AF4
B
193 203Right-handed alpha
Helix 50
AF5
B
237 239Right-handed 310
Helix 51
AF6
B
265 281Right-handed alpha
Helix 52
AF7
B
283 285Right-handed 310
Helix 53
AF8
B
299 312Right-handed alpha
Helix 54
AF9
B
325 330Right-handed alpha
Helix 55
AG1
B
335 351Right-handed alpha
Helix 56
AG2
B
366 370Right-handed 310
Helix 57
AG3
B
415 420Right-handed 310
Helix 58
AG4
B
430 444Right-handed alpha
Helix 59
AG5
B
447 457Right-handed alpha
Helix 60
AG6
B
507 512Right-handed 310
Helix 61
AG7
B
513 528Right-handed alpha
Helix 62
AG8
B
533 540Right-handed alpha
Helix 63
AG9
B
548 570Right-handed alpha
Helix 64
AH1
B
581 592Right-handed alpha
Helix 65
AH2
B
595 613Right-handed alpha
Helix 66
AH3
B
626 634Right-handed alpha
Helix 67
AH4
B
654 667Right-handed alpha
Helix 68
AH5
B
690 699Right-handed alpha
Helix 69
AH6
B
718 722Right-handed 310
Helix 70
AH7
B
731 740Right-handed alpha
Helix 71
AH8
B
748 752Right-handed 310
Helix 72
AH9
B
767 775Right-handed alpha
Helix 73
AI1
B
791 807Right-handed alpha
Helix 74
AI2
B
811 815Right-handed 310
Helix 75
AI3
B
830 834Right-handed 310
Helix 76
AI4
B
846 850Right-handed 310
Helix 77
AI5
C
2158 2170Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9MJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
320 323parallel
Strand 3
A
287 291parallel
Strand 4
A
387 393parallel
Strand 5
A
398 406anti-parallel
Strand 6
A
244 253anti-parallel
Strand 7
A
4 12anti-parallel
Strand 8
A
227 235anti-parallel
Strand 9
A
182 189anti-parallel
Strand 10
A
106 110parallel
Strand 11
A
154 158parallel
Strand 12
B
154 158anti-parallel
Strand 13
B
106 110parallel
Strand 14
B
182 189parallel
Strand 15
B
227 235anti-parallel
Strand 16
B
4 12anti-parallel
Strand 17
B
244 253anti-parallel
Strand 18
B
398 406anti-parallel
Strand 19
B
387 393anti-parallel
Strand 20
B
287 291parallel
Strand 21
B
320 323parallel
Strand 22
B
374 376parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
381 382anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 428first strand
Strand 2
A
467 473anti-parallel
Strand 3
A
481 484anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 713first strand
Strand 2
A
576 579parallel
Strand 3
A
492 496parallel
Strand 4
A
757 761parallel
Strand 5
A
780 782parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
649 652anti-parallel
Strand 3
A
639 643anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 353first strand
Strand 2
B
381 382anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 428first strand
Strand 2
B
467 473anti-parallel
Strand 3
B
481 484anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
712 713first strand
Strand 2
B
576 579parallel
Strand 3
B
492 496parallel
Strand 4
B
757 761parallel
Strand 5
B
780 782parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 623first strand
Strand 2
B
649 652anti-parallel
Strand 3
B
639 643anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il