Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MJA entry

There are 2 chains in PDB entry 9MJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 662TRP 1014
B
 GLU 30ALA 345
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9MJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
666 677Right-handed alpha
Helix 2
AA2
A
789 797Right-handed alpha
Helix 3
AA3
A
808 821Right-handed alpha
Helix 4
AA4
A
843 849Right-handed alpha
Helix 5
AA5
A
850 852Right-handed 310
Helix 6
AA6
A
865 867Right-handed 310
Helix 7
AA7
A
868 876Right-handed alpha
Helix 8
AA8
A
885 889Right-handed 310
Helix 9
AA9
A
900 906Right-handed alpha
Helix 10
AB1
A
907 909Right-handed 310
Helix 11
AB2
B
34 45Right-handed alpha
Helix 12
AB3
B
50 64Right-handed alpha
Helix 13
AB4
B
72 77Right-handed alpha
Helix 14
AB5
B
82 88Right-handed alpha
Helix 15
AB6
B
160 176Right-handed alpha
Helix 16
AB7
B
178 200Right-handed alpha
Helix 17
AB8
B
207 216Right-handed alpha
Helix 18
AB9
B
244 258Right-handed alpha
Helix 19
AC1
B
260 268Right-handed alpha
Helix 20
AC2
B
268 284Right-handed alpha
Helix 21
AC3
B
286 301Right-handed alpha
Helix 22
AC4
B
302 304Right-handed 310
Helix 23
AC5
B
305 320Right-handed alpha
Helix 24
AC6
B
322 335Right-handed alpha
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There are 5 sheets in PDB entry 9MJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 803first strand
Strand 2
A
829 841anti-parallel
Strand 3
A
998 1009anti-parallel
Strand 4
A
916 925anti-parallel
Strand 5
A
857 860anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 897first strand
Strand 2
A
988 991anti-parallel
Strand 3
A
947 950anti-parallel
Strand 4
A
929 932parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
954 955first strand
Strand 2
A
975 976anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
962 964first strand
Strand 2
A
967 969anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 80first strand
Strand 2
B
115 120anti-parallel
Strand 3
B
127 132anti-parallel
Strand 4
B
142 147anti-parallel
Strand 5
B
155 156anti-parallel
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