Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MJD entry

There are 8 chains in PDB entry 9MJD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	GLN 1	PRO 212
R	ALA 3	THR 210
E	GLN 1	PRO 212
F	ALA 3	THR 210
I	GLN 1	PRO 212
J	ALA 3	THR 210
M	GLN 1	PRO 212
N	ALA 3	THR 210

There are 26 helices in PDB entry 9MJD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	28	32	Right-handed 310
Helix 2	AA2	P	61	64	Right-handed 310
Helix 3	AA3	P	83	87	Right-handed 310
Helix 4	AA4	R	79	83	Right-handed 310
Helix 5	AA5	R	122	128	Right-handed alpha
Helix 6	AA6	R	182	189	Right-handed alpha
Helix 7	AA7	E	28	32	Right-handed 310
Helix 8	AA8	E	83	87	Right-handed 310
Helix 9	AA9	E	155	157	Right-handed 310
Helix 10	AB1	E	200	203	Right-handed 310
Helix 11	AB2	F	79	83	Right-handed 310
Helix 12	AB3	F	122	128	Right-handed alpha
Helix 13	AB4	F	182	189	Right-handed alpha
Helix 14	AB5	I	28	32	Right-handed 310
Helix 15	AB6	I	61	64	Right-handed 310
Helix 16	AB7	I	83	87	Right-handed 310
Helix 17	AB8	J	79	83	Right-handed 310
Helix 18	AB9	J	122	128	Right-handed alpha
Helix 19	AC1	J	182	189	Right-handed alpha
Helix 20	AC2	M	28	32	Right-handed 310
Helix 21	AC3	M	61	64	Right-handed 310
Helix 22	AC4	M	83	87	Right-handed 310
Helix 23	AC5	M	200	203	Right-handed 310
Helix 24	AC6	N	79	83	Right-handed 310
Helix 25	AC7	N	122	128	Right-handed alpha
Helix 26	AC8	N	182	189	Right-handed alpha

There are 50 sheets in PDB entry 9MJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	3	6	first strand
Strand 2	P	18	25	anti-parallel
Strand 3	P	77	82	anti-parallel
Strand 4	P	67	72	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	57	59	first strand
Strand 2	P	45	51	anti-parallel
Strand 3	P	34	39	anti-parallel
Strand 4	P	89	94	anti-parallel
Strand 5	P	102	103	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	57	59	first strand
Strand 2	P	45	51	anti-parallel
Strand 3	P	34	39	anti-parallel
Strand 4	P	89	94	anti-parallel
Strand 5	P	107	108	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	119	123	first strand
Strand 2	P	136	144	anti-parallel
Strand 3	P	175	182	anti-parallel
Strand 4	P	163	164	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	119	123	first strand
Strand 2	P	136	144	anti-parallel
Strand 3	P	175	182	anti-parallel
Strand 4	P	168	169	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	150	153	first strand
Strand 2	P	194	199	anti-parallel
Strand 3	P	204	209	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	9	12	first strand
Strand 2	R	102	105	parallel
Strand 3	R	85	90	anti-parallel
Strand 4	R	34	38	anti-parallel
Strand 5	R	45	48	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	9	12	first strand
Strand 2	R	102	105	parallel
Strand 3	R	85	90	anti-parallel
Strand 4	R	97	98	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	18	24	first strand
Strand 2	R	70	76	anti-parallel
Strand 3	R	62	67	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	115	119	first strand
Strand 2	R	131	140	anti-parallel
Strand 3	R	173	181	anti-parallel
Strand 4	R	160	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	115	119	first strand
Strand 2	R	131	140	anti-parallel
Strand 3	R	173	181	anti-parallel
Strand 4	R	166	167	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	154	155	first strand
Strand 2	R	146	151	anti-parallel
Strand 3	R	192	197	anti-parallel
Strand 4	R	202	207	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	67	68	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	77	82	anti-parallel
Strand 4	E	71	72	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	47	51	anti-parallel
Strand 6	E	57	59	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	107	111	parallel
Strand 3	E	88	94	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	123	first strand
Strand 2	E	136	144	anti-parallel
Strand 3	E	175	182	anti-parallel
Strand 4	E	162	164	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	119	123	first strand
Strand 2	E	136	144	anti-parallel
Strand 3	E	175	182	anti-parallel
Strand 4	E	168	169	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	150	153	first strand
Strand 2	E	193	199	anti-parallel
Strand 3	E	204	210	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	19	24	first strand
Strand 2	F	70	75	anti-parallel
Strand 3	F	62	67	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	48	first strand
Strand 2	F	34	38	anti-parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	97	98	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	45	48	first strand
Strand 2	F	34	38	anti-parallel
Strand 3	F	84	90	anti-parallel
Strand 4	F	102	104	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	131	140	anti-parallel
Strand 3	F	173	181	anti-parallel
Strand 4	F	160	162	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	115	119	first strand
Strand 2	F	131	140	anti-parallel
Strand 3	F	173	181	anti-parallel
Strand 4	F	166	167	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	154	155	first strand
Strand 2	F	146	151	anti-parallel
Strand 3	F	192	198	anti-parallel
Strand 4	F	201	207	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	6	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	77	82	anti-parallel
Strand 4	I	67	72	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	94	anti-parallel
Strand 4	I	34	39	anti-parallel
Strand 5	I	45	51	anti-parallel
Strand 6	I	57	59	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	107	111	parallel
Strand 3	I	88	94	anti-parallel
Strand 4	I	102	103	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	123	first strand
Strand 2	I	136	144	anti-parallel
Strand 3	I	175	182	anti-parallel
Strand 4	I	162	164	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	119	123	first strand
Strand 2	I	136	144	anti-parallel
Strand 3	I	175	182	anti-parallel
Strand 4	I	168	169	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	150	153	first strand
Strand 2	I	193	199	anti-parallel
Strand 3	I	204	210	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	11	first strand
Strand 2	J	102	104	parallel
Strand 3	J	85	90	anti-parallel
Strand 4	J	34	38	anti-parallel
Strand 5	J	45	48	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	11	first strand
Strand 2	J	102	104	parallel
Strand 3	J	85	90	anti-parallel
Strand 4	J	97	98	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	18	24	first strand
Strand 2	J	70	76	anti-parallel
Strand 3	J	62	67	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	115	119	first strand
Strand 2	J	131	140	anti-parallel
Strand 3	J	173	181	anti-parallel
Strand 4	J	160	162	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	115	119	first strand
Strand 2	J	131	140	anti-parallel
Strand 3	J	173	181	anti-parallel
Strand 4	J	166	167	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	154	155	first strand
Strand 2	J	146	151	anti-parallel
Strand 3	J	192	198	anti-parallel
Strand 4	J	201	207	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	6	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	67	68	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	3	6	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	77	82	anti-parallel
Strand 4	M	71	72	anti-parallel

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There are 6 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	107	111	parallel
Strand 3	M	88	94	anti-parallel
Strand 4	M	34	39	anti-parallel
Strand 5	M	45	51	anti-parallel
Strand 6	M	57	59	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	12	first strand
Strand 2	M	107	111	parallel
Strand 3	M	88	94	anti-parallel
Strand 4	M	102	103	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	119	123	first strand
Strand 2	M	136	144	anti-parallel
Strand 3	M	175	182	anti-parallel
Strand 4	M	162	164	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	119	123	first strand
Strand 2	M	136	144	anti-parallel
Strand 3	M	175	182	anti-parallel
Strand 4	M	168	169	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	150	153	first strand
Strand 2	M	194	199	anti-parallel
Strand 3	M	204	209	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	19	24	first strand
Strand 2	N	70	75	anti-parallel
Strand 3	N	62	67	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	48	first strand
Strand 2	N	34	38	anti-parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	97	98	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	45	48	first strand
Strand 2	N	34	38	anti-parallel
Strand 3	N	85	90	anti-parallel
Strand 4	N	102	103	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	115	119	first strand
Strand 2	N	131	140	anti-parallel
Strand 3	N	173	181	anti-parallel
Strand 4	N	160	162	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	115	119	first strand
Strand 2	N	131	140	anti-parallel
Strand 3	N	173	181	anti-parallel
Strand 4	N	166	167	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	154	155	first strand
Strand 2	N	146	151	anti-parallel
Strand 3	N	192	198	anti-parallel
Strand 4	N	201	207	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MJD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MJD