Analysis of interatomic Contacts of Structural Units in PDB entry:
9MK3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MK3 entry

There is 1 chain in PDB entry 9MK3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 1254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are121 helices in PDB entry 9MK3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 7Right-handed 310
Helix 2
AA2
A
26 35Right-handed alpha
Helix 3
AA3
A
35 67Right-handed alpha
Helix 4
AA4
A
73 86Right-handed alpha
Helix 5
AA5
A
88 112Right-handed alpha
Helix 6
AA6
A
118 130Right-handed alpha
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
140 145Right-handed alpha
Helix 9
AA9
A
152 160Right-handed alpha
Helix 10
AB1
A
161 163Right-handed 310
Helix 11
AB2
A
165 168Right-handed 310
Helix 12
AB3
A
169 181Right-handed alpha
Helix 13
AB4
A
188 195Right-handed alpha
Helix 14
AB5
A
196 215Right-handed alpha
Helix 15
AB6
A
217 230Right-handed alpha
Helix 16
AB7
A
236 241Right-handed alpha
Helix 17
AB8
A
242 249Right-handed 310
Helix 18
AB9
A
251 264Right-handed alpha
Helix 19
AC1
A
276 286Right-handed alpha
Helix 20
AC2
A
289 298Right-handed alpha
Helix 21
AC3
A
325 344Right-handed alpha
Helix 22
AC4
A
344 356Right-handed alpha
Helix 23
AC5
A
357 359Right-handed 310
Helix 24
AC6
A
370 379Right-handed alpha
Helix 25
AC7
A
383 395Right-handed alpha
Helix 26
AC8
A
402 416Right-handed alpha
Helix 27
AC9
A
420 428Right-handed alpha
Helix 28
AD1
A
428 452Right-handed alpha
Helix 29
AD2
A
460 482Right-handed alpha
Helix 30
AD3
A
493 508Right-handed alpha
Helix 31
AD4
A
508 522Right-handed alpha
Helix 32
AD5
A
545 547Right-handed 310
Helix 33
AD6
A
548 553Right-handed alpha
Helix 34
AD7
A
600 609Right-handed alpha
Helix 35
AD8
A
612 620Right-handed alpha
Helix 36
AD9
A
639 647Right-handed alpha
Helix 37
AE1
A
656 663Right-handed alpha
Helix 38
AE2
A
665 687Right-handed alpha
Helix 39
AE3
A
700 704Right-handed 310
Helix 40
AE4
A
706 715Right-handed alpha
Helix 41
AE5
A
728 737Right-handed alpha
Helix 42
AE6
A
747 751Right-handed 310
Helix 43
AE7
A
759 769Right-handed alpha
Helix 44
AE8
A
770 776Right-handed alpha
Helix 45
AE9
A
819 831Right-handed alpha
Helix 46
AF1
A
839 846Right-handed alpha
Helix 47
AF2
A
847 849Right-handed 310
Helix 48
AF3
A
861 865Right-handed 310
Helix 49
AF4
A
887 898Right-handed alpha
Helix 50
AF5
A
940 957Right-handed alpha
Helix 51
AF6
A
964 987Right-handed alpha
Helix 52
AF7
A
1008 1024Right-handed alpha
Helix 53
AF8
A
1084 1088Right-handed 310
Helix 54
AF9
A
1090 1100Right-handed alpha
Helix 55
AG1
A
1122 1126Right-handed 310
Helix 56
AG2
A
1177 1190Right-handed alpha
Helix 57
AG3
A
1199 1207Right-handed alpha
Helix 58
AG4
A
1208 1223Right-handed alpha
Helix 59
AG5
A
1252 1254Right-handed 310
Helix 60
AG6
A
1261 1284Right-handed alpha
Helix 61
AG7
A
1294 1307Right-handed alpha
Helix 62
AG8
E
3 7Right-handed 310
Helix 63
AG9
E
26 35Right-handed alpha
Helix 64
AH1
E
35 67Right-handed alpha
Helix 65
AH2
E
73 87Right-handed alpha
Helix 66
AH3
E
88 112Right-handed alpha
Helix 67
AH4
E
118 131Right-handed alpha
Helix 68
AH5
E
135 140Right-handed alpha
Helix 69
AH6
E
140 145Right-handed alpha
Helix 70
AH7
E
152 161Right-handed alpha
Helix 71
AH8
E
165 168Right-handed 310
Helix 72
AH9
E
169 181Right-handed alpha
Helix 73
AI1
E
188 196Right-handed alpha
Helix 74
AI2
E
196 215Right-handed alpha
Helix 75
AI3
E
216 230Right-handed alpha
Helix 76
AI4
E
236 241Right-handed alpha
Helix 77
AI5
E
242 249Right-handed 310
Helix 78
AI6
E
251 264Right-handed alpha
Helix 79
AI7
E
276 286Right-handed alpha
Helix 80
AI8
E
289 298Right-handed alpha
Helix 81
AI9
E
325 343Right-handed alpha
Helix 82
AJ1
E
344 356Right-handed alpha
Helix 83
AJ2
E
360 363Right-handed 310
Helix 84
AJ3
E
367 369Right-handed 310
Helix 85
AJ4
E
370 379Right-handed alpha
Helix 86
AJ5
E
383 395Right-handed alpha
Helix 87
AJ6
E
402 416Right-handed alpha
Helix 88
AJ7
E
420 427Right-handed alpha
Helix 89
AJ8
E
429 452Right-handed alpha
Helix 90
AJ9
E
460 482Right-handed alpha
Helix 91
AK1
E
493 508Right-handed alpha
Helix 92
AK2
E
508 522Right-handed alpha
Helix 93
AK3
E
545 547Right-handed 310
Helix 94
AK4
E
548 553Right-handed alpha
Helix 95
AK5
E
600 608Right-handed alpha
Helix 96
AK6
E
612 622Right-handed alpha
Helix 97
AK7
E
639 647Right-handed alpha
Helix 98
AK8
E
656 663Right-handed alpha
Helix 99
AK9
E
665 687Right-handed alpha
Helix 100
AL1
E
700 704Right-handed 310
Helix 101
AL2
E
706 715Right-handed alpha
Helix 102
AL3
E
728 738Right-handed alpha
Helix 103
AL4
E
747 751Right-handed 310
Helix 104
AL5
E
759 769Right-handed alpha
Helix 105
AL6
E
770 776Right-handed alpha
Helix 106
AL7
E
819 831Right-handed alpha
Helix 107
AL8
E
839 846Right-handed alpha
Helix 108
AL9
E
847 849Right-handed 310
Helix 109
AM1
E
861 865Right-handed 310
Helix 110
AM2
E
887 898Right-handed alpha
Helix 111
AM3
E
940 957Right-handed alpha
Helix 112
AM4
E
964 987Right-handed alpha
Helix 113
AM5
E
1011 1025Right-handed alpha
Helix 114
AM6
E
1051 1055Right-handed 310
Helix 115
AM7
E
1090 1101Right-handed alpha
Helix 116
AM8
E
1177 1189Right-handed alpha
Helix 117
AM9
E
1199 1204Right-handed alpha
Helix 118
AN1
E
1208 1223Right-handed alpha
Helix 119
AN2
E
1250 1254Right-handed 310
Helix 120
AN3
E
1261 1284Right-handed alpha
Helix 121
AN4
E
1294 1307Right-handed alpha
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There are 23 sheets in PDB entry 9MK3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
13 23anti-parallel
Strand 5
A
741 746anti-parallel
Strand 6
A
562 567anti-parallel
Strand 7
A
554 559anti-parallel
Strand 8
A
589 597anti-parallel
Strand 9
A
719 727anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
531 533first strand
Strand 2
A
786 790anti-parallel
Strand 3
A
868 877anti-parallel
Strand 4
A
780 781anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 419first strand
Strand 2
A
365 366anti-parallel
Strand 3
A
484 485anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
626 628first strand
Strand 2
A
636 638anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
797 798first strand
Strand 2
A
859 860anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
805 807first strand
Strand 2
A
851 853anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
926 931first strand
Strand 2
A
916 920anti-parallel
Strand 3
A
904 908anti-parallel
Strand 4
A
989 994parallel
Strand 5
A
1062 1066parallel
Strand 6
A
1058 1059anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
934 935first strand
Strand 2
A
938 939anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1103 1106first strand
Strand 2
A
1113 1118anti-parallel
Strand 3
A
1135 1140anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1145 1147first strand
Strand 2
A
1153 1155anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1159 1162first strand
Strand 2
A
1173 1176anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1229first strand
Strand 2
A
1234 1242anti-parallel
Strand 3
A
1248 1250anti-parallel
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There are 9 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
531 533first strand
Strand 2
E
786 790anti-parallel
Strand 3
E
868 877anti-parallel
Strand 4
E
13 23anti-parallel
Strand 5
E
741 746anti-parallel
Strand 6
E
562 567anti-parallel
Strand 7
E
554 559anti-parallel
Strand 8
E
589 597anti-parallel
Strand 9
E
719 727anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
531 533first strand
Strand 2
E
786 790anti-parallel
Strand 3
E
868 877anti-parallel
Strand 4
E
780 781anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
365 366first strand
Strand 2
E
418 419anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
626 628first strand
Strand 2
E
636 638anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
805 807first strand
Strand 2
E
851 853anti-parallel
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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
926 931first strand
Strand 2
E
916 920anti-parallel
Strand 3
E
904 908anti-parallel
Strand 4
E
989 993parallel
Strand 5
E
1062 1065parallel
Strand 6
E
1058 1059anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
934 935first strand
Strand 2
E
938 939anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1103 1106first strand
Strand 2
E
1113 1118anti-parallel
Strand 3
E
1135 1140anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1145 1147first strand
Strand 2
E
1153 1155anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1159 1162first strand
Strand 2
E
1173 1176anti-parallel
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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
1226 1228first strand
Strand 2
E
1235 1237anti-parallel
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