Analysis of interatomic Contacts of Structural Units in PDB entry:
9MKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MKJ entry

There are 48 chains in PDB entry 9MKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2LEU 2
A
 GLU 4GLU 4
A
 LEU 6SER 8
A
 LEU 10LEU 10
B
 LEU 2LEU 2
B
 GLU 4GLU 4
B
 LEU 6SER 8
B
 LEU 10LEU 10
C
 LEU 2LEU 2
C
 GLU 4GLU 4
C
 LEU 6SER 8
C
 LEU 10LEU 10
D
 LEU 2LEU 2
D
 GLU 4GLU 4
D
 LEU 6SER 8
D
 LEU 10LEU 10
E
 LEU 2LEU 2
E
 GLU 4GLU 4
E
 LEU 6SER 8
E
 LEU 10LEU 10
F
 LEU 2LEU 2
F
 GLU 4GLU 4
F
 LEU 6SER 8
F
 LEU 10LEU 10
G
 LEU 2LEU 2
G
 GLU 4GLU 4
G
 LEU 6SER 8
G
 LEU 10LEU 10
H
 LEU 2LEU 2
H
 GLU 4GLU 4
H
 LEU 6SER 8
H
 LEU 10LEU 10
I
 LEU 2LEU 2
I
 GLU 4GLU 4
I
 LEU 6SER 8
I
 LEU 10LEU 10
J
 LEU 2LEU 2
J
 GLU 4GLU 4
J
 LEU 6SER 8
J
 LEU 10LEU 10
K
 LEU 2LEU 2
K
 GLU 4GLU 4
K
 LEU 6SER 8
K
 LEU 10LEU 10
L
 LEU 2LEU 2
L
 GLU 4GLU 4
L
 LEU 6SER 8
L
 LEU 10LEU 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9MKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 10Right-handed alpha
Helix 2
AA2
B
2 10Right-handed alpha
Helix 3
AA3
C
2 10Right-handed alpha
Helix 4
AA4
D
2 10Right-handed alpha
Helix 5
AA5
E
2 10Right-handed alpha
Helix 6
AA6
F
2 10Right-handed alpha
Helix 7
AA7
G
2 10Right-handed alpha
Helix 8
AA8
H
2 10Right-handed alpha
Helix 9
AA9
I
2 10Right-handed alpha
Helix 10
AB1
J
2 10Right-handed alpha
Helix 11
AB2
K
2 10Right-handed alpha
Helix 12
AB3
L
2 10Right-handed alpha
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There are no sheets in PDB entry 9MKJ
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il