Analysis of interatomic Contacts of Structural Units in PDB entry:
9MKT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MKT entry

There are 2 chains in PDB entry 9MKT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 1300
B
 A -19 A 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 9MKT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
35 46Right-handed alpha
Helix 3
AA3
A
47 66Right-handed alpha
Helix 4
AA4
A
75 89Right-handed alpha
Helix 5
AA5
A
91 116Right-handed alpha
Helix 6
AA6
A
124 129Right-handed alpha
Helix 7
AA7
A
136 143Right-handed alpha
Helix 8
AA8
A
152 156Right-handed 310
Helix 9
AA9
A
161 172Right-handed alpha
Helix 10
AB1
A
175 178Right-handed 310
Helix 11
AB2
A
179 188Right-handed alpha
Helix 12
AB3
A
189 191Right-handed 310
Helix 13
AB4
A
198 206Right-handed alpha
Helix 14
AB5
A
206 225Right-handed alpha
Helix 15
AB6
A
233 238Right-handed alpha
Helix 16
AB7
A
239 242Right-handed 310
Helix 17
AB8
A
259 264Right-handed alpha
Helix 18
AB9
A
265 270Right-handed alpha
Helix 19
AC1
A
271 273Right-handed 310
Helix 20
AC2
A
274 287Right-handed alpha
Helix 21
AC3
A
299 312Right-handed alpha
Helix 22
AC4
A
346 356Right-handed alpha
Helix 23
AC5
A
369 383Right-handed alpha
Helix 24
AC6
A
396 407Right-handed alpha
Helix 25
AC7
A
411 424Right-handed alpha
Helix 26
AC8
A
436 442Right-handed alpha
Helix 27
AC9
A
444 449Right-handed alpha
Helix 28
AD1
A
453 466Right-handed alpha
Helix 29
AD2
A
480 496Right-handed alpha
Helix 30
AD3
A
499 504Right-handed alpha
Helix 31
AD4
A
520 537Right-handed alpha
Helix 32
AD5
A
538 541Right-handed 310
Helix 33
AD6
A
564 573Right-handed alpha
Helix 34
AD7
A
574 587Right-handed alpha
Helix 35
AD8
A
643 648Right-handed alpha
Helix 36
AD9
A
664 673Right-handed alpha
Helix 37
AE1
A
687 695Right-handed alpha
Helix 38
AE2
A
713 731Right-handed alpha
Helix 39
AE3
A
731 736Right-handed alpha
Helix 40
AE4
A
749 761Right-handed alpha
Helix 41
AE5
A
773 781Right-handed alpha
Helix 42
AE6
A
790 794Right-handed 310
Helix 43
AE7
A
802 811Right-handed alpha
Helix 44
AE8
A
813 819Right-handed alpha
Helix 45
AE9
A
895 907Right-handed alpha
Helix 46
AF1
A
956 961Right-handed alpha
Helix 47
AF2
A
976 1000Right-handed alpha
Helix 48
AF3
A
1020 1036Right-handed alpha
Helix 49
AF4
A
1064 1068Right-handed 310
Helix 50
AF5
A
1080 1084Right-handed 310
Helix 51
AF6
A
1101 1110Right-handed alpha
Helix 52
AF7
A
1169 1180Right-handed alpha
Helix 53
AF8
A
1190 1198Right-handed alpha
Helix 54
AF9
A
1202 1216Right-handed alpha
Helix 55
AG1
A
1242 1246Right-handed 310
Helix 56
AG2
A
1255 1275Right-handed alpha
Helix 57
AG3
A
1287 1299Right-handed alpha
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There are 9 sheets in PDB entry 9MKT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
13 22anti-parallel
Strand 5
A
785 789anti-parallel
Strand 6
A
627 631anti-parallel
Strand 7
A
620 624anti-parallel
Strand 8
A
655 661anti-parallel
Strand 9
A
762 768anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
596 597first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
822 824anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 393first strand
Strand 2
A
451 452anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
841 843first strand
Strand 2
A
867 868anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
935 940first strand
Strand 2
A
924 929anti-parallel
Strand 3
A
912 918anti-parallel
Strand 4
A
1001 1006parallel
Strand 5
A
1074 1077parallel
Strand 6
A
1070 1071anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
944 945first strand
Strand 2
A
950 951anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1118first strand
Strand 2
A
1123 1129anti-parallel
Strand 3
A
1141 1145anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1150 1152first strand
Strand 2
A
1166 1168anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1218 1219first strand
Strand 2
A
1228 1229anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il