Analysis of interatomic Contacts of Structural Units in PDB entry:
9MKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MKU entry

There are 3 chains in PDB entry 9MKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 A -19 A 8
C
 T -8 T -1
A
 MET 1ASN 1300
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 9MKU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
35 66Right-handed alpha
Helix 3
AA3
A
67 69Right-handed 310
Helix 4
AA4
A
72 86Right-handed alpha
Helix 5
AA5
A
91 116Right-handed alpha
Helix 6
AA6
A
116 121Right-handed alpha
Helix 7
AA7
A
124 128Right-handed 310
Helix 8
AA8
A
136 148Right-handed alpha
Helix 9
AA9
A
161 171Right-handed alpha
Helix 10
AB1
A
175 178Right-handed 310
Helix 11
AB2
A
179 188Right-handed alpha
Helix 12
AB3
A
198 204Right-handed alpha
Helix 13
AB4
A
206 225Right-handed alpha
Helix 14
AB5
A
230 238Right-handed alpha
Helix 15
AB6
A
239 241Right-handed 310
Helix 16
AB7
A
261 265Right-handed 310
Helix 17
AB8
A
266 273Right-handed 310
Helix 18
AB9
A
274 286Right-handed alpha
Helix 19
AC1
A
299 311Right-handed alpha
Helix 20
AC2
A
344 362Right-handed alpha
Helix 21
AC3
A
369 383Right-handed alpha
Helix 22
AC4
A
398 406Right-handed alpha
Helix 23
AC5
A
411 426Right-handed alpha
Helix 24
AC6
A
453 465Right-handed alpha
Helix 25
AC7
A
474 484Right-handed alpha
Helix 26
AC8
A
485 505Right-handed alpha
Helix 27
AC9
A
512 518Right-handed 310
Helix 28
AD1
A
519 540Right-handed alpha
Helix 29
AD2
A
560 573Right-handed alpha
Helix 30
AD3
A
574 586Right-handed alpha
Helix 31
AD4
A
613 618Right-handed alpha
Helix 32
AD5
A
642 649Right-handed alpha
Helix 33
AD6
A
667 674Right-handed alpha
Helix 34
AD7
A
678 683Right-handed alpha
Helix 35
AD8
A
685 694Right-handed alpha
Helix 36
AD9
A
713 731Right-handed alpha
Helix 37
AE1
A
732 736Right-handed 310
Helix 38
AE2
A
749 754Right-handed alpha
Helix 39
AE3
A
770 781Right-handed alpha
Helix 40
AE4
A
802 812Right-handed alpha
Helix 41
AE5
A
813 819Right-handed alpha
Helix 42
AE6
A
870 875Right-handed 310
Helix 43
AE7
A
895 907Right-handed alpha
Helix 44
AE8
A
952 964Right-handed alpha
Helix 45
AE9
A
977 1000Right-handed alpha
Helix 46
AF1
A
1019 1036Right-handed alpha
Helix 47
AF2
A
1101 1110Right-handed alpha
Helix 48
AF3
A
1169 1181Right-handed alpha
Helix 49
AF4
A
1191 1198Right-handed alpha
Helix 50
AF5
A
1200 1215Right-handed alpha
Helix 51
AF6
A
1253 1275Right-handed alpha
Helix 52
AF7
A
1287 1296Right-handed alpha
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There are 11 sheets in PDB entry 9MKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
877 886anti-parallel
Strand 3
A
822 824anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 18first strand
Strand 2
A
877 886anti-parallel
Strand 3
A
829 833anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 23first strand
Strand 2
A
783 788anti-parallel
Strand 3
A
627 633anti-parallel
Strand 4
A
619 624anti-parallel
Strand 5
A
650 659anti-parallel
Strand 6
A
764 769anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 244first strand
Strand 2
A
256 257anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
287 288first strand
Strand 2
A
297 298anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
450 452anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
848 850first strand
Strand 2
A
860 862anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
935 940first strand
Strand 2
A
924 929anti-parallel
Strand 3
A
912 918anti-parallel
Strand 4
A
1001 1006parallel
Strand 5
A
1074 1077parallel
Strand 6
A
1070 1071anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1114 1118first strand
Strand 2
A
1123 1129anti-parallel
Strand 3
A
1141 1145anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1150 1153first strand
Strand 2
A
1165 1168anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1218 1219first strand
Strand 2
A
1228 1229anti-parallel
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