Analysis of interatomic Contacts of Structural Units in PDB entry:
9MKV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MKV entry

There are 4 chains in PDB entry 9MKV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2ASN 1300
B
 A -19 U 10
C
 A -10 A 4
D
 T -4 G 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 9MKV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
39 69Right-handed alpha
Helix 3
AA3
A
73 79Right-handed alpha
Helix 4
AA4
A
83 89Right-handed alpha
Helix 5
AA5
A
94 115Right-handed alpha
Helix 6
AA6
A
116 121Right-handed alpha
Helix 7
AA7
A
124 128Right-handed 310
Helix 8
AA8
A
137 143Right-handed alpha
Helix 9
AA9
A
161 171Right-handed alpha
Helix 10
AB1
A
180 190Right-handed alpha
Helix 11
AB2
A
198 206Right-handed alpha
Helix 12
AB3
A
206 222Right-handed alpha
Helix 13
AB4
A
232 238Right-handed alpha
Helix 14
AB5
A
265 273Right-handed 310
Helix 15
AB6
A
274 287Right-handed alpha
Helix 16
AB7
A
299 307Right-handed alpha
Helix 17
AB8
A
613 618Right-handed alpha
Helix 18
AB9
A
643 648Right-handed alpha
Helix 19
AC1
A
668 674Right-handed alpha
Helix 20
AC2
A
677 681Right-handed 310
Helix 21
AC3
A
685 692Right-handed alpha
Helix 22
AC4
A
715 731Right-handed alpha
Helix 23
AC5
A
734 738Right-handed 310
Helix 24
AC6
A
749 759Right-handed alpha
Helix 25
AC7
A
771 781Right-handed alpha
Helix 26
AC8
A
790 794Right-handed 310
Helix 27
AC9
A
802 811Right-handed alpha
Helix 28
AD1
A
813 819Right-handed alpha
Helix 29
AD2
A
895 908Right-handed alpha
Helix 30
AD3
A
909 911Right-handed 310
Helix 31
AD4
A
978 994Right-handed alpha
Helix 32
AD5
A
995 1000Right-handed alpha
Helix 33
AD6
A
1022 1036Right-handed alpha
Helix 34
AD7
A
1102 1111Right-handed alpha
Helix 35
AD8
A
1169 1181Right-handed alpha
Helix 36
AD9
A
1191 1198Right-handed alpha
Helix 37
AE1
A
1200 1216Right-handed alpha
Helix 38
AE2
A
1242 1246Right-handed 310
Helix 39
AE3
A
1253 1275Right-handed alpha
Helix 40
AE4
A
1287 1298Right-handed alpha
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There are 5 sheets in PDB entry 9MKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 596first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
13 22anti-parallel
Strand 5
A
783 789anti-parallel
Strand 6
A
627 633anti-parallel
Strand 7
A
620 624anti-parallel
Strand 8
A
655 661anti-parallel
Strand 9
A
762 767anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 596first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
822 824anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
935 940first strand
Strand 2
A
924 929anti-parallel
Strand 3
A
912 918anti-parallel
Strand 4
A
1001 1006parallel
Strand 5
A
1074 1077parallel
Strand 6
A
1070 1071anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1115 1116first strand
Strand 2
A
1125 1127anti-parallel
Strand 3
A
1143 1144anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1150 1151first strand
Strand 2
A
1167 1168anti-parallel
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