Analysis of interatomic Contacts of Structural Units in PDB entry:
9MKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MKX entry

There are 4 chains in PDB entry 9MKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 3ASN 1300
B
 A -19 U 11
C
 T -15 A 4
D
 T -4 G 2
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 9MKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 35Right-handed alpha
Helix 2
AA2
A
35 40Right-handed alpha
Helix 3
AA3
A
40 69Right-handed alpha
Helix 4
AA4
A
74 89Right-handed alpha
Helix 5
AA5
A
91 116Right-handed alpha
Helix 6
AA6
A
117 122Right-handed 310
Helix 7
AA7
A
124 128Right-handed 310
Helix 8
AA8
A
136 143Right-handed alpha
Helix 9
AA9
A
161 172Right-handed alpha
Helix 10
AB1
A
175 178Right-handed 310
Helix 11
AB2
A
179 191Right-handed alpha
Helix 12
AB3
A
198 206Right-handed alpha
Helix 13
AB4
A
206 225Right-handed alpha
Helix 14
AB5
A
232 238Right-handed alpha
Helix 15
AB6
A
259 264Right-handed alpha
Helix 16
AB7
A
265 270Right-handed alpha
Helix 17
AB8
A
274 287Right-handed alpha
Helix 18
AB9
A
299 311Right-handed alpha
Helix 19
AC1
A
346 360Right-handed alpha
Helix 20
AC2
A
369 382Right-handed alpha
Helix 21
AC3
A
396 407Right-handed alpha
Helix 22
AC4
A
411 424Right-handed alpha
Helix 23
AC5
A
443 448Right-handed alpha
Helix 24
AC6
A
453 464Right-handed alpha
Helix 25
AC7
A
480 499Right-handed alpha
Helix 26
AC8
A
500 507Right-handed alpha
Helix 27
AC9
A
520 538Right-handed alpha
Helix 28
AD1
A
564 572Right-handed alpha
Helix 29
AD2
A
575 588Right-handed alpha
Helix 30
AD3
A
613 618Right-handed alpha
Helix 31
AD4
A
642 648Right-handed alpha
Helix 32
AD5
A
668 674Right-handed alpha
Helix 33
AD6
A
685 695Right-handed alpha
Helix 34
AD7
A
713 716Right-handed 310
Helix 35
AD8
A
717 722Right-handed alpha
Helix 36
AD9
A
724 731Right-handed alpha
Helix 37
AE1
A
743 747Right-handed 310
Helix 38
AE2
A
749 761Right-handed alpha
Helix 39
AE3
A
771 781Right-handed alpha
Helix 40
AE4
A
790 794Right-handed 310
Helix 41
AE5
A
802 810Right-handed alpha
Helix 42
AE6
A
813 819Right-handed alpha
Helix 43
AE7
A
895 905Right-handed alpha
Helix 44
AE8
A
953 961Right-handed alpha
Helix 45
AE9
A
975 998Right-handed alpha
Helix 46
AF1
A
1024 1035Right-handed alpha
Helix 47
AF2
A
1101 1112Right-handed alpha
Helix 48
AF3
A
1130 1134Right-handed alpha
Helix 49
AF4
A
1169 1173Right-handed 310
Helix 50
AF5
A
1174 1181Right-handed alpha
Helix 51
AF6
A
1191 1198Right-handed alpha
Helix 52
AF7
A
1200 1213Right-handed alpha
Helix 53
AF8
A
1242 1246Right-handed 310
Helix 54
AF9
A
1255 1275Right-handed alpha
Helix 55
AG1
A
1287 1298Right-handed alpha
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There are 7 sheets in PDB entry 9MKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
15 23anti-parallel
Strand 5
A
785 789anti-parallel
Strand 6
A
627 632anti-parallel
Strand 7
A
619 624anti-parallel
Strand 8
A
654 660anti-parallel
Strand 9
A
763 769anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
595 597first strand
Strand 2
A
829 833anti-parallel
Strand 3
A
877 886anti-parallel
Strand 4
A
822 824anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
392 394first strand
Strand 2
A
450 452anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
849 850first strand
Strand 2
A
860 861anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
935 940first strand
Strand 2
A
925 929anti-parallel
Strand 3
A
912 917anti-parallel
Strand 4
A
1001 1007parallel
Strand 5
A
1075 1078parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
943 944first strand
Strand 2
A
951 952anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1125 1129first strand
Strand 2
A
1141 1145anti-parallel
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