Analysis of interatomic Contacts of Structural Units in PDB entry:
9MKY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MKY entry

There are 3 chains in PDB entry 9MKY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 40	PHE 471
A	ASP 40	PHE 471
B	ASP 40	PHE 471

There are 55 helices in PDB entry 9MKY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	40	45	Right-handed alpha
Helix 2	AA2	C	49	56	Right-handed alpha
Helix 3	AA3	C	58	88	Right-handed alpha
Helix 4	AA4	C	119	123	Right-handed alpha
Helix 5	AA5	C	127	136	Right-handed alpha
Helix 6	AA6	C	137	139	Right-handed 310
Helix 7	AA7	C	148	161	Right-handed alpha
Helix 8	AA8	C	165	173	Right-handed alpha
Helix 9	AA9	C	193	195	Right-handed 310
Helix 10	AB1	C	243	247	Right-handed 310
Helix 11	AB2	C	304	308	Right-handed 310
Helix 12	AB3	C	311	328	Right-handed alpha
Helix 13	AB4	C	335	339	Right-handed 310
Helix 14	AB5	C	343	350	Right-handed alpha
Helix 15	AB6	C	350	362	Right-handed alpha
Helix 16	AB7	C	393	405	Right-handed alpha
Helix 17	AB8	C	407	414	Right-handed alpha
Helix 18	AB9	C	437	454	Right-handed alpha
Helix 19	AC1	C	456	471	Right-handed alpha
Helix 20	AC2	A	41	45	Right-handed alpha
Helix 21	AC3	A	49	56	Right-handed alpha
Helix 22	AC4	A	58	88	Right-handed alpha
Helix 23	AC5	A	119	123	Right-handed alpha
Helix 24	AC6	A	127	136	Right-handed alpha
Helix 25	AC7	A	137	139	Right-handed 310
Helix 26	AC8	A	148	161	Right-handed alpha
Helix 27	AC9	A	165	173	Right-handed alpha
Helix 28	AD1	A	193	195	Right-handed 310
Helix 29	AD2	A	304	308	Right-handed 310
Helix 30	AD3	A	311	328	Right-handed alpha
Helix 31	AD4	A	335	339	Right-handed 310
Helix 32	AD5	A	343	350	Right-handed alpha
Helix 33	AD6	A	350	362	Right-handed alpha
Helix 34	AD7	A	393	405	Right-handed alpha
Helix 35	AD8	A	407	414	Right-handed alpha
Helix 36	AD9	A	437	454	Right-handed alpha
Helix 37	AE1	A	456	471	Right-handed alpha
Helix 38	AE2	B	41	45	Right-handed alpha
Helix 39	AE3	B	49	56	Right-handed alpha
Helix 40	AE4	B	58	88	Right-handed alpha
Helix 41	AE5	B	119	123	Right-handed alpha
Helix 42	AE6	B	127	136	Right-handed alpha
Helix 43	AE7	B	137	139	Right-handed 310
Helix 44	AE8	B	148	161	Right-handed alpha
Helix 45	AE9	B	165	173	Right-handed alpha
Helix 46	AF1	B	193	195	Right-handed 310
Helix 47	AF2	B	304	308	Right-handed 310
Helix 48	AF3	B	311	328	Right-handed alpha
Helix 49	AF4	B	335	339	Right-handed 310
Helix 50	AF5	B	343	350	Right-handed alpha
Helix 51	AF6	B	350	362	Right-handed alpha
Helix 52	AF7	B	393	405	Right-handed alpha
Helix 53	AF8	B	407	414	Right-handed alpha
Helix 54	AF9	B	437	454	Right-handed alpha
Helix 55	AG1	B	456	471	Right-handed alpha

There are 15 sheets in PDB entry 9MKY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	99	first strand
Strand 2	C	415	434	anti-parallel
Strand 3	C	277	289	parallel
Strand 4	C	378	381	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	191	first strand
Strand 2	C	182	187	anti-parallel
Strand 3	C	228	234	anti-parallel
Strand 4	C	415	434	anti-parallel
Strand 5	C	277	289	parallel
Strand 6	C	384	390	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	202	first strand
Strand 2	C	205	210	anti-parallel
Strand 3	C	108	113	anti-parallel
Strand 4	C	252	258	anti-parallel
Strand 5	C	271	274	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	240	241	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	366	367	first strand
Strand 2	C	373	374	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	99	first strand
Strand 2	A	415	434	anti-parallel
Strand 3	A	277	289	parallel
Strand 4	A	378	381	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	191	first strand
Strand 2	A	182	187	anti-parallel
Strand 3	A	228	234	anti-parallel
Strand 4	A	415	434	anti-parallel
Strand 5	A	277	289	parallel
Strand 6	A	384	390	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	202	first strand
Strand 2	A	205	210	anti-parallel
Strand 3	A	108	113	anti-parallel
Strand 4	A	252	258	anti-parallel
Strand 5	A	271	274	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	240	241	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	366	367	first strand
Strand 2	A	373	374	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	92	99	first strand
Strand 2	B	415	434	anti-parallel
Strand 3	B	277	289	parallel
Strand 4	B	378	381	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	191	first strand
Strand 2	B	182	187	anti-parallel
Strand 3	B	228	234	anti-parallel
Strand 4	B	415	434	anti-parallel
Strand 5	B	277	289	parallel
Strand 6	B	384	390	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	202	first strand
Strand 2	B	205	210	anti-parallel
Strand 3	B	108	113	anti-parallel
Strand 4	B	252	258	anti-parallel
Strand 5	B	271	274	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	240	241	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	366	367	first strand
Strand 2	B	373	374	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MKY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MKY