Analysis of interatomic Contacts of Structural Units in PDB entry:
9MLA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MLA entry

There are 12 chains in PDB entry 9MLA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 100	VAL 459
B	ASN 100	VAL 459
C	ASN 100	VAL 459
D	PHE 466	GLY 620
E	PHE 466	GLY 620
F	PHE 466	GLY 620
G	GLN 1	VAL 119
H	GLN 1	VAL 119
I	GLN 1	VAL 119
J	ILE 1	LEU 107
K	ILE 1	LEU 107
L	ILE 1	LEU 107

There are 40 helices in PDB entry 9MLA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	144	148	Right-handed 310
Helix 2	AA2	A	292	297	Right-handed alpha
Helix 3	AA3	A	338	345	Right-handed alpha
Helix 4	AA4	A	447	459	Right-handed alpha
Helix 5	AA5	B	144	148	Right-handed 310
Helix 6	AA6	B	292	297	Right-handed alpha
Helix 7	AA7	B	338	345	Right-handed alpha
Helix 8	AA8	B	447	459	Right-handed alpha
Helix 9	AA9	C	292	297	Right-handed alpha
Helix 10	AB1	C	338	345	Right-handed alpha
Helix 11	AB2	C	447	459	Right-handed alpha
Helix 12	AB3	D	476	492	Right-handed alpha
Helix 13	AB4	D	498	512	Right-handed alpha
Helix 14	AB5	D	519	524	Right-handed alpha
Helix 15	AB6	D	529	548	Right-handed alpha
Helix 16	AB7	D	571	580	Right-handed alpha
Helix 17	AB8	D	589	599	Right-handed alpha
Helix 18	AB9	D	602	607	Right-handed alpha
Helix 19	AC1	D	610	618	Right-handed alpha
Helix 20	AC2	E	476	492	Right-handed alpha
Helix 21	AC3	E	498	512	Right-handed alpha
Helix 22	AC4	E	519	524	Right-handed alpha
Helix 23	AC5	E	529	549	Right-handed alpha
Helix 24	AC6	E	571	580	Right-handed alpha
Helix 25	AC7	E	589	599	Right-handed alpha
Helix 26	AC8	E	602	607	Right-handed alpha
Helix 27	AC9	E	610	618	Right-handed alpha
Helix 28	AD1	F	476	492	Right-handed alpha
Helix 29	AD2	F	498	512	Right-handed alpha
Helix 30	AD3	F	519	524	Right-handed alpha
Helix 31	AD4	F	529	548	Right-handed alpha
Helix 32	AD5	F	571	581	Right-handed alpha
Helix 33	AD6	F	589	599	Right-handed alpha
Helix 34	AD7	F	602	607	Right-handed alpha
Helix 35	AD8	F	610	618	Right-handed alpha
Helix 36	AD9	G	87	91	Right-handed 310
Helix 37	AE1	I	87	91	Right-handed 310
Helix 38	AE2	J	82	86	Right-handed 310
Helix 39	AE3	K	82	86	Right-handed 310
Helix 40	AE4	L	82	86	Right-handed 310

There are 42 sheets in PDB entry 9MLA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	496	497	first strand
Strand 2	A	433	438	parallel
Strand 3	A	102	107	anti-parallel
Strand 4	D	559	564	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	423	429	anti-parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	402	411	anti-parallel
Strand 5	A	164	165	first strand

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	157	first strand
Strand 2	A	402	411	anti-parallel
Strand 3	A	387	392	anti-parallel
Strand 4	A	423	429	anti-parallel
Strand 5	A	395	397	first strand

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	381	382	anti-parallel
Strand 3	A	413	414	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	174	184	first strand
Strand 2	A	190	202	anti-parallel
Strand 3	A	349	361	anti-parallel
Strand 4	A	364	377	anti-parallel
Strand 5	A	303	309	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	206	207	first strand
Strand 2	A	213	214	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	251	257	anti-parallel
Strand 3	A	260	264	anti-parallel
Strand 4	A	325	329	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	272	first strand
Strand 2	A	314	316	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	496	497	first strand
Strand 2	B	433	439	parallel
Strand 3	B	101	107	anti-parallel
Strand 4	E	559	564	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	423	429	anti-parallel
Strand 3	B	387	392	anti-parallel
Strand 4	B	402	411	anti-parallel
Strand 5	B	164	165	first strand

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	157	first strand
Strand 2	B	402	411	anti-parallel
Strand 3	B	387	392	anti-parallel
Strand 4	B	423	429	anti-parallel
Strand 5	B	395	397	first strand

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	126	127	first strand
Strand 2	B	381	382	anti-parallel
Strand 3	B	413	414	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	174	184	first strand
Strand 2	B	190	202	anti-parallel
Strand 3	B	349	361	anti-parallel
Strand 4	B	364	377	anti-parallel
Strand 5	B	303	309	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	206	207	first strand
Strand 2	B	213	214	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	251	257	anti-parallel
Strand 3	B	260	264	anti-parallel
Strand 4	B	325	329	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	270	272	first strand
Strand 2	B	314	316	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	496	497	first strand
Strand 2	C	433	438	parallel
Strand 3	C	102	107	anti-parallel
Strand 4	F	559	564	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	423	429	anti-parallel
Strand 3	C	387	392	anti-parallel
Strand 4	C	402	411	anti-parallel
Strand 5	C	164	165	first strand

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	150	157	first strand
Strand 2	C	402	411	anti-parallel
Strand 3	C	387	392	anti-parallel
Strand 4	C	423	429	anti-parallel
Strand 5	C	395	397	first strand

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	127	first strand
Strand 2	C	381	382	anti-parallel
Strand 3	C	413	414	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	184	first strand
Strand 2	C	190	202	anti-parallel
Strand 3	C	349	361	anti-parallel
Strand 4	C	364	377	anti-parallel
Strand 5	C	303	309	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	206	207	first strand
Strand 2	C	213	214	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	251	257	anti-parallel
Strand 3	C	260	264	anti-parallel
Strand 4	C	325	329	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	270	272	first strand
Strand 2	C	314	316	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	3	6	first strand
Strand 2	G	17	25	anti-parallel
Strand 3	G	78	84	anti-parallel
Strand 4	G	68	73	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	11	first strand
Strand 2	G	117	118	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	60	first strand
Strand 2	G	45	51	anti-parallel
Strand 3	G	34	39	anti-parallel
Strand 4	G	93	99	anti-parallel
Strand 5	G	108	111	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	17	25	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	117	118	parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	60	first strand
Strand 2	H	45	51	anti-parallel
Strand 3	H	34	39	anti-parallel
Strand 4	H	93	99	anti-parallel
Strand 5	H	108	111	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	11	first strand
Strand 2	I	117	118	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	17	23	first strand
Strand 2	I	78	84	anti-parallel
Strand 3	I	68	73	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	58	60	first strand
Strand 2	I	45	51	anti-parallel
Strand 3	I	34	39	anti-parallel
Strand 4	I	93	99	anti-parallel
Strand 5	I	108	111	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	24	anti-parallel
Strand 3	J	73	78	anti-parallel
Strand 4	J	65	70	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	29	30	first strand
Strand 2	J	33	34	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	56	57	first strand
Strand 2	J	48	52	anti-parallel
Strand 3	J	36	41	anti-parallel
Strand 4	J	87	93	anti-parallel
Strand 5	J	106	107	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	18	24	anti-parallel
Strand 3	K	73	78	anti-parallel
Strand 4	K	65	70	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	29	30	first strand
Strand 2	K	33	34	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	56	57	first strand
Strand 2	K	48	52	anti-parallel
Strand 3	K	36	41	anti-parallel
Strand 4	K	88	93	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	3	6	first strand
Strand 2	L	18	24	anti-parallel
Strand 3	L	73	78	anti-parallel
Strand 4	L	65	70	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	29	30	first strand
Strand 2	L	33	34	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	56	57	first strand
Strand 2	L	48	52	anti-parallel
Strand 3	L	36	41	anti-parallel
Strand 4	L	87	93	anti-parallel
Strand 5	L	106	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MLA

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MLA