Analysis of interatomic Contacts of Structural Units in PDB entry:
9MLL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MLL entry

There are 20 chains in PDB entry 9MLL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 40	ARG 135
B	ASP 25	GLY 103
C	ARG 12	LYS 119
D	ARG 34	ALA 125
E	TYR 42	GLU 134
F	ARG 20	GLY 103
G	ALA 15	PRO 118
H	LYS 35	THR 123
I	A -67	C 69
J	G -69	T 67
L	TYR 42	ARG 135
M	ARG 20	GLY 103
N	LYS 16	PRO 118
O	LYS 35	THR 123
P	PRO 39	GLU 134
Q	ASP 25	GLY 103
R	ALA 13	LYS 119
S	ARG 34	SER 124
X	A -69	G 58
Y	C -58	T 69

There are 68 helices in PDB entry 9MLL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	58	Right-handed alpha
Helix 2	AA2	A	64	78	Right-handed alpha
Helix 3	AA3	A	86	115	Right-handed alpha
Helix 4	AA4	A	121	132	Right-handed alpha
Helix 5	AA5	B	25	30	Right-handed 310
Helix 6	AA6	B	31	42	Right-handed alpha
Helix 7	AA7	B	50	77	Right-handed alpha
Helix 8	AA8	B	83	94	Right-handed alpha
Helix 9	AA9	C	17	23	Right-handed alpha
Helix 10	AB1	C	27	38	Right-handed alpha
Helix 11	AB2	C	46	74	Right-handed alpha
Helix 12	AB3	C	80	91	Right-handed alpha
Helix 13	AB4	C	93	98	Right-handed alpha
Helix 14	AB5	C	113	117	Right-handed 310
Helix 15	AB6	D	38	50	Right-handed alpha
Helix 16	AB7	D	56	85	Right-handed alpha
Helix 17	AB8	D	91	103	Right-handed alpha
Helix 18	AB9	D	104	124	Right-handed alpha
Helix 19	AC1	E	45	58	Right-handed alpha
Helix 20	AC2	E	64	80	Right-handed alpha
Helix 21	AC3	E	86	115	Right-handed alpha
Helix 22	AC4	E	121	133	Right-handed alpha
Helix 23	AC5	F	31	42	Right-handed alpha
Helix 24	AC6	F	50	78	Right-handed alpha
Helix 25	AC7	F	83	95	Right-handed alpha
Helix 26	AC8	G	17	23	Right-handed alpha
Helix 27	AC9	G	27	37	Right-handed alpha
Helix 28	AD1	G	47	74	Right-handed alpha
Helix 29	AD2	G	80	89	Right-handed alpha
Helix 30	AD3	G	91	98	Right-handed alpha
Helix 31	AD4	H	40	50	Right-handed alpha
Helix 32	AD5	H	56	85	Right-handed alpha
Helix 33	AD6	H	91	103	Right-handed alpha
Helix 34	AD7	H	104	123	Right-handed alpha
Helix 35	AD8	L	45	58	Right-handed alpha
Helix 36	AD9	L	64	80	Right-handed alpha
Helix 37	AE1	L	86	115	Right-handed alpha
Helix 38	AE2	L	121	132	Right-handed alpha
Helix 39	AE3	M	31	40	Right-handed alpha
Helix 40	AE4	M	50	77	Right-handed alpha
Helix 41	AE5	M	83	94	Right-handed alpha
Helix 42	AE6	N	17	23	Right-handed alpha
Helix 43	AE7	N	27	38	Right-handed alpha
Helix 44	AE8	N	46	74	Right-handed alpha
Helix 45	AE9	N	80	91	Right-handed alpha
Helix 46	AF1	N	93	98	Right-handed alpha
Helix 47	AF2	N	113	117	Right-handed 310
Helix 48	AF3	O	38	50	Right-handed alpha
Helix 49	AF4	O	56	85	Right-handed alpha
Helix 50	AF5	O	91	103	Right-handed alpha
Helix 51	AF6	O	104	123	Right-handed alpha
Helix 52	AF7	P	45	58	Right-handed alpha
Helix 53	AF8	P	64	80	Right-handed alpha
Helix 54	AF9	P	86	115	Right-handed alpha
Helix 55	AG1	P	121	133	Right-handed alpha
Helix 56	AG2	Q	25	30	Right-handed 310
Helix 57	AG3	Q	31	42	Right-handed alpha
Helix 58	AG4	Q	50	77	Right-handed alpha
Helix 59	AG5	Q	83	95	Right-handed alpha
Helix 60	AG6	R	17	23	Right-handed alpha
Helix 61	AG7	R	27	37	Right-handed alpha
Helix 62	AG8	R	47	74	Right-handed alpha
Helix 63	AG9	R	80	89	Right-handed alpha
Helix 64	AH1	R	91	98	Right-handed alpha
Helix 65	AH2	S	40	50	Right-handed alpha
Helix 66	AH3	S	56	85	Right-handed alpha
Helix 67	AH4	S	91	103	Right-handed alpha
Helix 68	AH5	S	104	124	Right-handed alpha

There are 18 sheets in PDB entry 9MLL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	B	81	82	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	B	46	47	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	99	first strand
Strand 2	G	101	103	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	44	first strand
Strand 2	D	89	90	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	78	79	first strand
Strand 2	D	54	55	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	103	first strand
Strand 2	F	98	99	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	84	85	first strand
Strand 2	F	81	82	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	44	first strand
Strand 2	H	89	90	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	H	54	55	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	84	85	first strand
Strand 2	M	81	82	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	98	99	first strand
Strand 2	R	102	103	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	43	44	first strand
Strand 2	O	89	90	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	78	79	first strand
Strand 2	O	54	55	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	102	103	first strand
Strand 2	Q	98	99	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	84	85	first strand
Strand 2	Q	81	82	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	119	120	first strand
Strand 2	Q	46	47	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	43	44	first strand
Strand 2	S	89	90	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	78	79	first strand
Strand 2	S	54	55	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MLL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MLL