Analysis of interatomic Contacts of Structural Units in PDB entry:
9MM2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MM2 entry

There is 1 chain in PDB entry 9MM2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9GLY 427
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 9MM2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 36Right-handed alpha
Helix 2
AA2
A
71 75Right-handed 310
Helix 3
AA3
A
81 84Right-handed 310
Helix 4
AA4
A
113 124Right-handed alpha
Helix 5
AA5
A
166 172Right-handed alpha
Helix 6
AA6
A
187 191Right-handed 310
Helix 7
AA7
A
196 204Right-handed 310
Helix 8
AA8
A
310 314Right-handed 310
Helix 9
AA9
A
346 354Right-handed alpha
Helix 10
AB1
A
387 391Right-handed 310
Helix 11
AB2
A
399 404Right-handed alpha
Helix 12
AB3
A
418 422Right-handed 310
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There are 6 sheets in PDB entry 9MM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
37 38parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 18first strand
Strand 2
A
45 49parallel
Strand 3
A
65 69parallel
Strand 4
A
151 153parallel
Strand 5
A
219 222parallel
Strand 6
A
240 244parallel
Strand 7
A
260 264parallel
Strand 8
A
293 296parallel
Strand 9
A
334 338parallel
Strand 10
A
373 377parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 55first strand
Strand 2
A
91 95parallel
Strand 3
A
155 159parallel
Strand 4
A
225 227parallel
Strand 5
A
247 250parallel
Strand 6
A
267 270parallel
Strand 7
A
299 302parallel
Strand 8
A
341 342parallel
Strand 9
A
380 381parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 60first strand
Strand 2
A
143 145parallel
Strand 3
A
210 212parallel
Strand 4
A
233 235parallel
Strand 5
A
252 257parallel
Strand 6
A
281 285parallel
Strand 7
A
323 325parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 80first strand
Strand 2
A
85 86anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 103first strand
Strand 2
A
174 176anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il