Analysis of interatomic Contacts of Structural Units in PDB entry:
9MM5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MM5 entry

There are 3 chains in PDB entry 9MM5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1ALA 65
E
 GLU 29LYS 142
R
 GLN 33TYR 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9MM5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 20Right-handed alpha
Helix 2
AA2
A
22 38Right-handed alpha
Helix 3
AA3
A
42 65Right-handed alpha
Helix 4
AA4
E
30 49Right-handed alpha
Helix 5
AA5
E
58 81Right-handed alpha
Helix 6
AA6
E
88 100Right-handed alpha
Helix 7
AA7
E
118 142Right-handed alpha
Helix 8
AA8
R
34 54Right-handed alpha
Helix 9
AA9
R
132 166Right-handed alpha
Helix 10
AB1
R
167 170Right-handed 310
Helix 11
AB2
R
171 198Right-handed alpha
Helix 12
AB3
R
201 207Right-handed alpha
Helix 13
AB4
R
209 243Right-handed alpha
Helix 14
AB5
R
252 261Right-handed alpha
Helix 15
AB6
R
263 277Right-handed alpha
Helix 16
AB7
R
280 284Right-handed 310
Helix 17
AB8
R
288 290Right-handed 310
Helix 18
AB9
R
291 319Right-handed alpha
Helix 19
AC1
R
319 324Right-handed alpha
Helix 20
AC2
R
325 347Right-handed alpha
Helix 21
AC3
R
347 352Right-handed alpha
Helix 22
AC4
R
357 375Right-handed alpha
Helix 23
AC5
R
375 386Right-handed alpha
Helix 24
AC6
R
388 402Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9MM5.

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
R
82 87first strand
Strand 2
R
100 105anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il