Analysis of interatomic Contacts of Structural Units in PDB entry:
9MMI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9MMI entry

There are 3 chains in PDB entry 9MMI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	VAL 262
B	ASN 3	ALA 263
C	LEU 4	LYS 131

There are 35 helices in PDB entry 9MMI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	26	Right-handed alpha
Helix 2	AA2	A	30	34	Right-handed 310
Helix 3	AA3	A	44	62	Right-handed alpha
Helix 4	AA4	A	90	97	Right-handed alpha
Helix 5	AA5	A	149	152	Right-handed 310
Helix 6	AA6	A	166	181	Right-handed alpha
Helix 7	AA7	A	189	199	Right-handed alpha
Helix 8	AA8	A	211	225	Right-handed alpha
Helix 9	AA9	A	245	257	Right-handed alpha
Helix 10	AB1	B	4	26	Right-handed alpha
Helix 11	AB2	B	30	34	Right-handed 310
Helix 12	AB3	B	44	62	Right-handed alpha
Helix 13	AB4	B	90	97	Right-handed alpha
Helix 14	AB5	B	149	152	Right-handed 310
Helix 15	AB6	B	166	181	Right-handed alpha
Helix 16	AB7	B	189	199	Right-handed alpha
Helix 17	AB8	B	211	225	Right-handed alpha
Helix 18	AB9	B	245	257	Right-handed alpha
Helix 19	AC1	C	5	26	Right-handed alpha
Helix 20	AC2	C	44	62	Right-handed alpha
Helix 21	AC3	C	90	97	Right-handed alpha
Helix 22	AC4	C	149	152	Right-handed 310
Helix 23	AC5	C	168	181	Right-handed alpha
Helix 24	AC6	C	189	199	Right-handed alpha
Helix 25	AC7	C	211	225	Right-handed alpha
Helix 26	AC8	C	245	257	Right-handed alpha
Helix 27	AC9	D	5	26	Right-handed alpha
Helix 28	AD1	D	30	34	Right-handed 310
Helix 29	AD2	D	44	62	Right-handed alpha
Helix 30	AD3	D	90	97	Right-handed alpha
Helix 31	AD4	D	149	152	Right-handed 310
Helix 32	AD5	D	169	181	Right-handed alpha
Helix 33	AD6	D	189	199	Right-handed alpha
Helix 34	AD7	D	211	225	Right-handed alpha
Helix 35	AD8	D	245	255	Right-handed alpha

There are 10 sheets in PDB entry 9MMI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	41	43	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	75	first strand
Strand 2	A	66	69	anti-parallel
Strand 3	A	81	89	parallel
Strand 4	A	102	109	anti-parallel
Strand 5	A	112	120	anti-parallel
Strand 6	A	125	130	anti-parallel
Strand 7	A	134	137	anti-parallel
Strand 8	A	140	141	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	183	185	first strand
Strand 2	A	154	158	parallel
Strand 3	A	204	210	parallel
Strand 4	A	239	244	anti-parallel
Strand 5	A	228	233	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	42	43	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	73	75	first strand
Strand 2	B	66	69	anti-parallel
Strand 3	B	81	89	parallel
Strand 4	B	102	109	anti-parallel
Strand 5	B	112	120	anti-parallel
Strand 6	B	125	130	anti-parallel
Strand 7	B	134	137	anti-parallel
Strand 8	B	140	141	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	183	185	first strand
Strand 2	B	154	158	parallel
Strand 3	B	204	210	parallel
Strand 4	B	239	244	anti-parallel
Strand 5	B	228	233	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	69	first strand
Strand 2	C	81	89	parallel
Strand 3	C	102	109	anti-parallel
Strand 4	C	112	120	anti-parallel
Strand 5	C	125	130	anti-parallel
Strand 6	C	134	137	anti-parallel
Strand 7	C	140	141	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	154	158	parallel
Strand 3	C	204	210	parallel
Strand 4	C	239	244	anti-parallel
Strand 5	C	228	233	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	75	first strand
Strand 2	D	66	69	anti-parallel
Strand 3	D	81	89	parallel
Strand 4	D	102	109	anti-parallel
Strand 5	D	112	120	anti-parallel
Strand 6	D	125	130	anti-parallel
Strand 7	D	135	137	anti-parallel
Strand 8	D	140	141	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	185	first strand
Strand 2	D	154	158	parallel
Strand 3	D	204	210	parallel
Strand 4	D	239	244	anti-parallel
Strand 5	D	228	233	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9MMI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9MMI