Analysis of interatomic Contacts of Structural Units in PDB entry:
9MMP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MMP entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 9MMP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASP 2SER 230
D
 ASP 2SER 230
A
 THR 138THR 258
A
 THR 260ALA 620
A
 GLU 622HIS 661
B
 GLU 62GLY 380
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 9MMP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
2 16Right-handed alpha
Helix 2
AA2
C
18 32Right-handed alpha
Helix 3
AA3
C
37 70Right-handed alpha
Helix 4
AA4
C
74 105Right-handed alpha
Helix 5
AA5
C
111 133Right-handed alpha
Helix 6
AA6
C
135 160Right-handed alpha
Helix 7
AA7
C
164 181Right-handed alpha
Helix 8
AA8
C
184 202Right-handed alpha
Helix 9
AA9
C
211 230Right-handed alpha
Helix 10
AB1
D
3 16Right-handed alpha
Helix 11
AB2
D
18 31Right-handed alpha
Helix 12
AB3
D
37 67Right-handed alpha
Helix 13
AB4
D
74 89Right-handed alpha
Helix 14
AB5
D
90 104Right-handed alpha
Helix 15
AB6
D
111 133Right-handed alpha
Helix 16
AB7
D
135 160Right-handed alpha
Helix 17
AB8
D
164 181Right-handed alpha
Helix 18
AB9
D
184 201Right-handed alpha
Helix 19
AC1
D
208 210Right-handed 310
Helix 20
AC2
D
211 228Right-handed alpha
Helix 21
AC3
A
175 180Right-handed 310
Helix 22
AC4
A
345 349Right-handed 310
Helix 23
AC5
A
383 399Right-handed alpha
Helix 24
AC6
A
428 434Right-handed alpha
Helix 25
AC7
A
441 462Right-handed alpha
Helix 26
AC8
A
470 472Right-handed 310
Helix 27
AC9
A
478 480Right-handed 310
Helix 28
AD1
A
489 494Right-handed alpha
Helix 29
AD2
A
513 519Right-handed alpha
Helix 30
AD3
A
526 544Right-handed alpha
Helix 31
AD4
A
553 563Right-handed alpha
Helix 32
AD5
A
569 573Right-handed 310
Helix 33
AD6
A
578 589Right-handed alpha
Helix 34
AD7
A
598 613Right-handed alpha
Helix 35
AD8
B
104 116Right-handed alpha
Helix 36
AD9
B
117 121Right-handed 310
Helix 37
AE1
B
150 158Right-handed alpha
Helix 38
AE2
B
162 184Right-handed alpha
Helix 39
AE3
B
192 194Right-handed 310
Helix 40
AE4
B
212 220Right-handed alpha
Helix 41
AE5
B
231 236Right-handed alpha
Helix 42
AE6
B
241 258Right-handed alpha
Helix 43
AE7
B
309 320Right-handed alpha
Helix 44
AE8
B
331 342Right-handed alpha
Helix 45
AE9
B
351 358Right-handed alpha
Helix 46
AF1
B
358 367Right-handed alpha
Helix 47
AF2
B
370 380Right-handed alpha
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There are 5 sheets in PDB entry 9MMP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 145first strand
Strand 2
A
161 165anti-parallel
Strand 3
A
171 173anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 357first strand
Strand 2
A
361 366anti-parallel
Strand 3
A
372 377anti-parallel
Strand 4
A
418 422anti-parallel
Strand 5
A
408 412anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 477first strand
Strand 2
A
481 484anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
80 86anti-parallel
Strand 3
B
93 100anti-parallel
Strand 4
B
138 144anti-parallel
Strand 5
B
131 134anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
196 198first strand
Strand 2
B
204 206anti-parallel
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