Analysis of interatomic Contacts of Structural Units in PDB entry:
9MMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9MMR entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 9MMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 343ALA 620
A
 GLU 622LEU 625
B
 GLU 62GLY 380
C
 ASP 2SER 230
D
 ASP 2SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9MMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
383 400Right-handed alpha
Helix 2
AA2
A
428 434Right-handed alpha
Helix 3
AA3
A
441 462Right-handed alpha
Helix 4
AA4
A
478 480Right-handed 310
Helix 5
AA5
A
489 494Right-handed alpha
Helix 6
AA6
A
513 518Right-handed alpha
Helix 7
AA7
A
526 544Right-handed alpha
Helix 8
AA8
A
553 563Right-handed alpha
Helix 9
AA9
A
569 573Right-handed 310
Helix 10
AB1
A
578 589Right-handed alpha
Helix 11
AB2
A
598 613Right-handed alpha
Helix 12
AB3
B
64 66Right-handed 310
Helix 13
AB4
B
104 116Right-handed alpha
Helix 14
AB5
B
117 120Right-handed 310
Helix 15
AB6
B
151 158Right-handed alpha
Helix 16
AB7
B
162 184Right-handed alpha
Helix 17
AB8
B
212 220Right-handed alpha
Helix 18
AB9
B
231 236Right-handed alpha
Helix 19
AC1
B
242 258Right-handed alpha
Helix 20
AC2
B
309 320Right-handed alpha
Helix 21
AC3
B
331 342Right-handed alpha
Helix 22
AC4
B
351 357Right-handed alpha
Helix 23
AC5
B
358 367Right-handed alpha
Helix 24
AC6
B
370 380Right-handed alpha
Helix 25
AC7
C
3 16Right-handed alpha
Helix 26
AC8
C
20 32Right-handed alpha
Helix 27
AC9
C
37 70Right-handed alpha
Helix 28
AD1
C
73 102Right-handed alpha
Helix 29
AD2
C
111 133Right-handed alpha
Helix 30
AD3
C
137 160Right-handed alpha
Helix 31
AD4
C
164 181Right-handed alpha
Helix 32
AD5
C
184 202Right-handed alpha
Helix 33
AD6
C
211 230Right-handed alpha
Helix 34
AD7
D
3 16Right-handed alpha
Helix 35
AD8
D
19 33Right-handed alpha
Helix 36
AD9
D
37 67Right-handed alpha
Helix 37
AE1
D
75 104Right-handed alpha
Helix 38
AE2
D
111 133Right-handed alpha
Helix 39
AE3
D
134 160Right-handed alpha
Helix 40
AE4
D
164 181Right-handed alpha
Helix 41
AE5
D
184 202Right-handed alpha
Helix 42
AE6
D
212 230Right-handed alpha
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There are 5 sheets in PDB entry 9MMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 357first strand
Strand 2
A
361 366anti-parallel
Strand 3
A
372 377anti-parallel
Strand 4
A
418 422anti-parallel
Strand 5
A
408 412anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 477first strand
Strand 2
A
481 484anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 497first strand
Strand 2
A
500 501anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 76first strand
Strand 2
B
80 87anti-parallel
Strand 3
B
92 100anti-parallel
Strand 4
B
138 144anti-parallel
Strand 5
B
131 134anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
196 198anti-parallel
Strand 3
B
204 206anti-parallel
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